miRNA display CGI


Results 1 - 20 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21693 5' -60.4 NC_004812.1 + 154095 0.66 0.785942
Target:  5'- -cCGCG-CUCGaCG-GCCG-CGCCgCCg -3'
miRNA:   3'- gaGUGCaGAGC-GCuCGGCuGCGGgGG- -5'
21693 5' -60.4 NC_004812.1 + 45016 0.66 0.785942
Target:  5'- gUCGCGggcgccaccaUCUUGUGGGCCGG-GCUCaCCa -3'
miRNA:   3'- gAGUGC----------AGAGCGCUCGGCUgCGGG-GG- -5'
21693 5' -60.4 NC_004812.1 + 6291 0.66 0.785942
Target:  5'- -gCACGgccaGgGGGagCGGCGCCCCCg -3'
miRNA:   3'- gaGUGCagagCgCUCg-GCUGCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 14176 0.66 0.785942
Target:  5'- uCUCcaGCGUCgccagggCGCGgaacucguuccGGCCGuccucggcccCGCCCCCg -3'
miRNA:   3'- -GAG--UGCAGa------GCGC-----------UCGGCu---------GCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 122979 0.66 0.785942
Target:  5'- -aCACGUagagCUCGgGGGCCauGAgGCCgCCg -3'
miRNA:   3'- gaGUGCA----GAGCgCUCGG--CUgCGGgGG- -5'
21693 5' -60.4 NC_004812.1 + 28587 0.66 0.785942
Target:  5'- -cCGCG-CUCGaCG-GCCG-CGCCgCCg -3'
miRNA:   3'- gaGUGCaGAGC-GCuCGGCuGCGGgGG- -5'
21693 5' -60.4 NC_004812.1 + 68415 0.66 0.785942
Target:  5'- -cCGCGgCUCGCcccgcGGCCGAgaggagggaCGCCCCg -3'
miRNA:   3'- gaGUGCaGAGCGc----UCGGCU---------GCGGGGg -5'
21693 5' -60.4 NC_004812.1 + 130553 0.66 0.785942
Target:  5'- -cCGgGggcgCGCGAgggcGCCG-CGCCCCCg -3'
miRNA:   3'- gaGUgCaga-GCGCU----CGGCuGCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 37192 0.66 0.785942
Target:  5'- -gCACGgccaGgGGGagCGGCGCCCCCg -3'
miRNA:   3'- gaGUGCagagCgCUCg-GCUGCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 68662 0.66 0.785942
Target:  5'- gCUCAacuaucUGUCUCGCacccagcGCCuGGCGUCCCUg -3'
miRNA:   3'- -GAGU------GCAGAGCGcu-----CGG-CUGCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 80523 0.66 0.785942
Target:  5'- cCUgGCGgagaagCUCGCGGaCCggGACGCCCgCg -3'
miRNA:   3'- -GAgUGCa-----GAGCGCUcGG--CUGCGGGgG- -5'
21693 5' -60.4 NC_004812.1 + 7668 0.66 0.785942
Target:  5'- uCUCGCGcCccgaccaccgUCGUc-GCCGACGCCgCCg -3'
miRNA:   3'- -GAGUGCaG----------AGCGcuCGGCUGCGGgGG- -5'
21693 5' -60.4 NC_004812.1 + 73124 0.66 0.785942
Target:  5'- gUCACG-CgggcCGCGGGauCCGGCGCgCCgCCg -3'
miRNA:   3'- gAGUGCaGa---GCGCUC--GGCUGCG-GG-GG- -5'
21693 5' -60.4 NC_004812.1 + 5044 0.66 0.785942
Target:  5'- -cCGgGggcgCGCGAgggcGCCG-CGCCCCCg -3'
miRNA:   3'- gaGUgCaga-GCGCU----CGGCuGCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 133176 0.66 0.785942
Target:  5'- uCUCGCGcCccgaccaccgUCGUc-GCCGACGCCgCCg -3'
miRNA:   3'- -GAGUGCaG----------AGCGcuCGGCUGCGGgGG- -5'
21693 5' -60.4 NC_004812.1 + 135124 0.66 0.785942
Target:  5'- -cCACGUCgugggCGCGcgcGGUCgGugGCCCgCCc -3'
miRNA:   3'- gaGUGCAGa----GCGC---UCGG-CugCGGG-GG- -5'
21693 5' -60.4 NC_004812.1 + 12140 0.66 0.785942
Target:  5'- gUCACGUUcccgCGCuGGGgCGGCGCgccgucggggCCCCa -3'
miRNA:   3'- gAGUGCAGa---GCG-CUCgGCUGCG----------GGGG- -5'
21693 5' -60.4 NC_004812.1 + 126610 0.66 0.785064
Target:  5'- -gCACGUCUucuaCGCGAccGCCGGCgaggcagaagccgGCCgCCa -3'
miRNA:   3'- gaGUGCAGA----GCGCU--CGGCUG-------------CGGgGG- -5'
21693 5' -60.4 NC_004812.1 + 1101 0.66 0.785064
Target:  5'- -gCACGUCUucuaCGCGAccGCCGGCgaggcagaagccgGCCgCCa -3'
miRNA:   3'- gaGUGCAGA----GCGCU--CGGCUG-------------CGGgGG- -5'
21693 5' -60.4 NC_004812.1 + 11180 0.66 0.783305
Target:  5'- gUCAuCGcCUCGCGcaAGCCGcgcaaguacuacacGCGCUCCUc -3'
miRNA:   3'- gAGU-GCaGAGCGC--UCGGC--------------UGCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.