miRNA display CGI


Results 21 - 40 of 474 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21693 5' -60.4 NC_004812.1 + 78634 0.66 0.780657
Target:  5'- --aGCG-CUCGaaGGCCGGCccggacacccucuucGCCCCCg -3'
miRNA:   3'- gagUGCaGAGCgcUCGGCUG---------------CGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 10832 0.66 0.780657
Target:  5'- gCUCGCGcugCUuccggcacccccccgCGCGAcGaCCGACgaGCCCCCc -3'
miRNA:   3'- -GAGUGCa--GA---------------GCGCU-C-GGCUG--CGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 130183 0.66 0.777108
Target:  5'- -gCGCGcCUCGUccaccuCCGGCGCgCCCCa -3'
miRNA:   3'- gaGUGCaGAGCGcuc---GGCUGCG-GGGG- -5'
21693 5' -60.4 NC_004812.1 + 127072 0.66 0.777108
Target:  5'- -cUACG-CgCGCGAGCCGcccGgGUCCCCc -3'
miRNA:   3'- gaGUGCaGaGCGCUCGGC---UgCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 97629 0.66 0.777108
Target:  5'- aUCGCGcUCUCGgaCGGcGCCGccaucucgGCCCCCa -3'
miRNA:   3'- gAGUGC-AGAGC--GCU-CGGCug------CGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 21531 0.66 0.777108
Target:  5'- --gACGggCUC-CGAGC--GCGCCCCCg -3'
miRNA:   3'- gagUGCa-GAGcGCUCGgcUGCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 25077 0.66 0.777108
Target:  5'- --gGCGggcucCUCGaCGGGgCGGCGCCgCCg -3'
miRNA:   3'- gagUGCa----GAGC-GCUCgGCUGCGGgGG- -5'
21693 5' -60.4 NC_004812.1 + 36723 0.66 0.777108
Target:  5'- -gCGCGgcgggCUCuGCGGGCCGgcgGCGCgCUCg -3'
miRNA:   3'- gaGUGCa----GAG-CGCUCGGC---UGCGgGGG- -5'
21693 5' -60.4 NC_004812.1 + 151740 0.66 0.777108
Target:  5'- cCUCGuuguuUCUCGCGcgGGCCG-CGgCCCCu -3'
miRNA:   3'- -GAGUgc---AGAGCGC--UCGGCuGCgGGGG- -5'
21693 5' -60.4 NC_004812.1 + 1342 0.66 0.777108
Target:  5'- cCUCcccgGUUUgGCGuccGCCG-CGCCCCCc -3'
miRNA:   3'- -GAGug--CAGAgCGCu--CGGCuGCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 21232 0.66 0.777108
Target:  5'- uCUCGCGg--CGaCGGGaccuccCCGugGCCCCa -3'
miRNA:   3'- -GAGUGCagaGC-GCUC------GGCugCGGGGg -5'
21693 5' -60.4 NC_004812.1 + 83520 0.66 0.777108
Target:  5'- -cCugGUgCUgGCGGcgacGCUucugGGCGCCCCCg -3'
miRNA:   3'- gaGugCA-GAgCGCU----CGG----CUGCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 5822 0.66 0.777108
Target:  5'- -gCGCGgcgggCUCuGCGGGCCGgcgGCGCgCUCg -3'
miRNA:   3'- gaGUGCa----GAG-CGCUCGGC---UGCGgGGG- -5'
21693 5' -60.4 NC_004812.1 + 35805 0.66 0.777108
Target:  5'- --uGCGUCUCG-GGGCCGuggggcuggGCGUCgCCg -3'
miRNA:   3'- gagUGCAGAGCgCUCGGC---------UGCGGgGG- -5'
21693 5' -60.4 NC_004812.1 + 67789 0.66 0.777108
Target:  5'- -gCGCGggcggCUUcgggggggGCGGGcCCGGCaGCCCCCc -3'
miRNA:   3'- gaGUGCa----GAG--------CGCUC-GGCUG-CGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 87351 0.66 0.777108
Target:  5'- gCUCAUGgagCGCGGGCUGcaguCGgCCCUg -3'
miRNA:   3'- -GAGUGCagaGCGCUCGGCu---GCgGGGG- -5'
21693 5' -60.4 NC_004812.1 + 126850 0.66 0.777108
Target:  5'- cCUCcccgGUUUgGCGuccGCCG-CGCCCCCc -3'
miRNA:   3'- -GAGug--CAGAgCGCu--CGGCuGCGGGGG- -5'
21693 5' -60.4 NC_004812.1 + 73095 0.66 0.777108
Target:  5'- aCUUAcCGggccugCUCGCGcaccgccuGGCCGucGCGCuCCCCg -3'
miRNA:   3'- -GAGU-GCa-----GAGCGC--------UCGGC--UGCG-GGGG- -5'
21693 5' -60.4 NC_004812.1 + 120839 0.66 0.777108
Target:  5'- cCUCGuuguuUCUCGCGcgGGCCG-CGgCCCCu -3'
miRNA:   3'- -GAGUgc---AGAGCGC--UCGGCuGCgGGGG- -5'
21693 5' -60.4 NC_004812.1 + 150586 0.66 0.777108
Target:  5'- --gGCGggcucCUCGaCGGGgCGGCGCCgCCg -3'
miRNA:   3'- gagUGCa----GAGC-GCUCgGCUGCGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.