miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21694 3' -56.5 NC_004812.1 + 107714 0.66 0.908618
Target:  5'- cCGCGAgcACCCCGC-GCUCGUag--CGg -3'
miRNA:   3'- uGCGUU--UGGGGCGaCGGGCAgauaGC- -5'
21694 3' -56.5 NC_004812.1 + 48198 0.66 0.908618
Target:  5'- cUGCAGGCCgCCGacgUGCCgGUUgagAUCGa -3'
miRNA:   3'- uGCGUUUGG-GGCg--ACGGgCAGa--UAGC- -5'
21694 3' -56.5 NC_004812.1 + 108306 0.66 0.908618
Target:  5'- cACGCccGAGCCCgcaCGCgcgugcgucccaUGUUCGUCUGUCGc -3'
miRNA:   3'- -UGCG--UUUGGG---GCG------------ACGGGCAGAUAGC- -5'
21694 3' -56.5 NC_004812.1 + 107604 0.66 0.908618
Target:  5'- cGCGUggGCCCgGCcGCCgggguucaCGUCUG-CGg -3'
miRNA:   3'- -UGCGuuUGGGgCGaCGG--------GCAGAUaGC- -5'
21694 3' -56.5 NC_004812.1 + 76737 0.66 0.908618
Target:  5'- uCGcCGGGCCCUGg-GCCCGgcggccgCUGUCGu -3'
miRNA:   3'- uGC-GUUUGGGGCgaCGGGCa------GAUAGC- -5'
21694 3' -56.5 NC_004812.1 + 18316 0.66 0.908618
Target:  5'- cGCGaCAggUUCCGgUGCCggaccacgggaUGUCUGUCGa -3'
miRNA:   3'- -UGC-GUuuGGGGCgACGG-----------GCAGAUAGC- -5'
21694 3' -56.5 NC_004812.1 + 65119 0.66 0.908012
Target:  5'- gGCGCGGcCCCUGCcgGUCgGUCUGgacgccuUCGg -3'
miRNA:   3'- -UGCGUUuGGGGCGa-CGGgCAGAU-------AGC- -5'
21694 3' -56.5 NC_004812.1 + 150814 0.66 0.902455
Target:  5'- cCGCAG-CCCCGCaGCCCGa------ -3'
miRNA:   3'- uGCGUUuGGGGCGaCGGGCagauagc -5'
21694 3' -56.5 NC_004812.1 + 119913 0.66 0.902455
Target:  5'- cCGCAG-CCCCGCaGCCCGa------ -3'
miRNA:   3'- uGCGUUuGGGGCGaCGGGCagauagc -5'
21694 3' -56.5 NC_004812.1 + 41498 0.66 0.902455
Target:  5'- cGCGCcGugCCUGCUGCUCGacgCUGa-- -3'
miRNA:   3'- -UGCGuUugGGGCGACGGGCa--GAUagc -5'
21694 3' -56.5 NC_004812.1 + 108992 0.66 0.902455
Target:  5'- -gGCuuuGCCCCGa-GCCCGUCgg-CGc -3'
miRNA:   3'- ugCGuu-UGGGGCgaCGGGCAGauaGC- -5'
21694 3' -56.5 NC_004812.1 + 32370 0.66 0.902455
Target:  5'- cGCGCGccCCCCGCcagGCCCGcCg---- -3'
miRNA:   3'- -UGCGUuuGGGGCGa--CGGGCaGauagc -5'
21694 3' -56.5 NC_004812.1 + 116957 0.66 0.902455
Target:  5'- uGCGCu--UCCUGgaGCUCGggCUGUCGg -3'
miRNA:   3'- -UGCGuuuGGGGCgaCGGGCa-GAUAGC- -5'
21694 3' -56.5 NC_004812.1 + 154195 0.66 0.896062
Target:  5'- cGCGCGcugggggcuGGCCgcgCCGCUgcgGCCCGUCUAc-- -3'
miRNA:   3'- -UGCGU---------UUGG---GGCGA---CGGGCAGAUagc -5'
21694 3' -56.5 NC_004812.1 + 92624 0.66 0.896062
Target:  5'- cGCGCGuucGCCCCGCUGCgcacCUGcCUcUUGg -3'
miRNA:   3'- -UGCGUu--UGGGGCGACG----GGCaGAuAGC- -5'
21694 3' -56.5 NC_004812.1 + 18470 0.66 0.896062
Target:  5'- gGCGC-GGCCCCGC-GCCCG-Cg---- -3'
miRNA:   3'- -UGCGuUUGGGGCGaCGGGCaGauagc -5'
21694 3' -56.5 NC_004812.1 + 83177 0.66 0.896062
Target:  5'- gGCGCGcGGCCCCGgaGCUCG-Cgg-CGg -3'
miRNA:   3'- -UGCGU-UUGGGGCgaCGGGCaGauaGC- -5'
21694 3' -56.5 NC_004812.1 + 83482 0.66 0.896062
Target:  5'- gGCGCGccgGAUCCCGCgGCCCG-Cg---- -3'
miRNA:   3'- -UGCGU---UUGGGGCGaCGGGCaGauagc -5'
21694 3' -56.5 NC_004812.1 + 28687 0.66 0.896062
Target:  5'- cGCGCGcugggggcuGGCCgcgCCGCUgcgGCCCGUCUAc-- -3'
miRNA:   3'- -UGCGU---------UUGG---GGCGA---CGGGCAGAUagc -5'
21694 3' -56.5 NC_004812.1 + 17895 0.66 0.896062
Target:  5'- cCGCGGGCCcgCCGC-GCCCG-CgGUCGu -3'
miRNA:   3'- uGCGUUUGG--GGCGaCGGGCaGaUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.