miRNA display CGI


Results 1 - 20 of 518 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21694 5' -64.9 NC_004812.1 + 111486 0.66 0.549829
Target:  5'- cGGCGCUgUGGGacacGCAGGUGcgacugaUCGCGGu -3'
miRNA:   3'- -CCGCGGgGCCCc---CGUCCGCa------AGCGUC- -5'
21694 5' -64.9 NC_004812.1 + 105690 0.66 0.549829
Target:  5'- cGGgGCCCCGaaGGCGGGUG---GCGGg -3'
miRNA:   3'- -CCgCGGGGCccCCGUCCGCaagCGUC- -5'
21694 5' -64.9 NC_004812.1 + 1612 0.66 0.549829
Target:  5'- gGGCGCCCCGcgcgaGGGaccgugcgcGCGGGUcccgCGCGGc -3'
miRNA:   3'- -CCGCGGGGC-----CCC---------CGUCCGcaa-GCGUC- -5'
21694 5' -64.9 NC_004812.1 + 155043 0.66 0.549829
Target:  5'- gGGgGaCCCGGGcGGCucGCGcgCGUAGg -3'
miRNA:   3'- -CCgCgGGGCCC-CCGucCGCaaGCGUC- -5'
21694 5' -64.9 NC_004812.1 + 30903 0.66 0.549829
Target:  5'- cGCGCCCCGcGGGCAccucccGGCagaaUCGCuGa -3'
miRNA:   3'- cCGCGGGGCcCCCGU------CCGca--AGCGuC- -5'
21694 5' -64.9 NC_004812.1 + 20168 0.66 0.549829
Target:  5'- cGGCGCucgggccccgaCCCGGGcGaGCGGGCGcgucUUCGagaGGa -3'
miRNA:   3'- -CCGCG-----------GGGCCC-C-CGUCCGC----AAGCg--UC- -5'
21694 5' -64.9 NC_004812.1 + 29535 0.66 0.549829
Target:  5'- gGGgGaCCCGGGcGGCucGCGcgCGUAGg -3'
miRNA:   3'- -CCgCgGGGCCC-CCGucCGCaaGCGUC- -5'
21694 5' -64.9 NC_004812.1 + 66652 0.66 0.549829
Target:  5'- aGGCGCgUCGGGaGGCGcGCcgccgcUCGCGGg -3'
miRNA:   3'- -CCGCGgGGCCC-CCGUcCGca----AGCGUC- -5'
21694 5' -64.9 NC_004812.1 + 127120 0.66 0.549829
Target:  5'- gGGCGCCCCGcgcgaGGGaccgugcgcGCGGGUcccgCGCGGc -3'
miRNA:   3'- -CCGCGGGGC-----CCC---------CGUCCGcaa-GCGUC- -5'
21694 5' -64.9 NC_004812.1 + 79417 0.66 0.549829
Target:  5'- gGGgGCCgCCgcuuugGGGGGCGGG-GUUUGgGGu -3'
miRNA:   3'- -CCgCGG-GG------CCCCCGUCCgCAAGCgUC- -5'
21694 5' -64.9 NC_004812.1 + 47200 0.66 0.549829
Target:  5'- aGGUGgaCCUGGGGGCGcGGCGccccgacugccUUUGCGu -3'
miRNA:   3'- -CCGCg-GGGCCCCCGU-CCGC-----------AAGCGUc -5'
21694 5' -64.9 NC_004812.1 + 108507 0.66 0.549829
Target:  5'- aGCGCCCgcaCGGGGcGCAcggcGGCGgcCGCc- -3'
miRNA:   3'- cCGCGGG---GCCCC-CGU----CCGCaaGCGuc -5'
21694 5' -64.9 NC_004812.1 + 81094 0.66 0.549829
Target:  5'- uGGgGCCCgUGGcGGuGCGGGCGgcgUGguGg -3'
miRNA:   3'- -CCgCGGG-GCC-CC-CGUCCGCaa-GCguC- -5'
21694 5' -64.9 NC_004812.1 + 25117 0.66 0.549829
Target:  5'- cGCGUUCCGGGGcGUGGGC---CGCAu -3'
miRNA:   3'- cCGCGGGGCCCC-CGUCCGcaaGCGUc -5'
21694 5' -64.9 NC_004812.1 + 13281 0.66 0.549829
Target:  5'- cGGCggagGCCUCGGcGcGGCgGGGCGUcCGCGu -3'
miRNA:   3'- -CCG----CGGGGCC-C-CCG-UCCGCAaGCGUc -5'
21694 5' -64.9 NC_004812.1 + 76525 0.66 0.549829
Target:  5'- cGGCuGCCUgguCGaGGGCgGGGCGUggaCGCGGg -3'
miRNA:   3'- -CCG-CGGG---GCcCCCG-UCCGCAa--GCGUC- -5'
21694 5' -64.9 NC_004812.1 + 150626 0.66 0.549829
Target:  5'- cGCGUUCCGGGGcGUGGGC---CGCAu -3'
miRNA:   3'- cCGCGGGGCCCC-CGUCCGcaaGCGUc -5'
21694 5' -64.9 NC_004812.1 + 81667 0.66 0.549829
Target:  5'- uGGCcacCUCCGGGGGguGGaCGggggGCAGc -3'
miRNA:   3'- -CCGc--GGGGCCCCCguCC-GCaag-CGUC- -5'
21694 5' -64.9 NC_004812.1 + 115334 0.66 0.549829
Target:  5'- aGCGCCUcgcuguagcuCGGGaGcGCGGGCGgggaCGCGGc -3'
miRNA:   3'- cCGCGGG----------GCCC-C-CGUCCGCaa--GCGUC- -5'
21694 5' -64.9 NC_004812.1 + 79986 0.66 0.548891
Target:  5'- cGCGCCCCGGGucgcccaGGCcguguccgAGGCcaUCGCc- -3'
miRNA:   3'- cCGCGGGGCCC-------CCG--------UCCGcaAGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.