miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21695 3' -47.5 NC_004812.1 + 94357 0.66 0.999813
Target:  5'- gGGcgGgcgGCGUUGgagcGCCGCccugcGGCGAGAUa -3'
miRNA:   3'- gUCuaCa--UGCAAU----UGGCG-----UUGCUCUA- -5'
21695 3' -47.5 NC_004812.1 + 47568 0.66 0.999813
Target:  5'- gUAGAUGUACGUgaugAACuCGCGAUccGAc -3'
miRNA:   3'- -GUCUACAUGCAa---UUG-GCGUUGcuCUa -5'
21695 3' -47.5 NC_004812.1 + 69944 0.66 0.999813
Target:  5'- gAGAUcg-UGUUGGCCGuCAACGAGGc -3'
miRNA:   3'- gUCUAcauGCAAUUGGC-GUUGCUCUa -5'
21695 3' -47.5 NC_004812.1 + 39070 0.66 0.999813
Target:  5'- gCGGGUGUcgGCGUgcgugAGCCGCGGCa---- -3'
miRNA:   3'- -GUCUACA--UGCAa----UUGGCGUUGcucua -5'
21695 3' -47.5 NC_004812.1 + 89958 0.66 0.999782
Target:  5'- gCGGGUG-ACGUgccagucgaacgaccUcaucAGCCGCGACGAGGc -3'
miRNA:   3'- -GUCUACaUGCA---------------A----UUGGCGUUGCUCUa -5'
21695 3' -47.5 NC_004812.1 + 43973 0.66 0.99976
Target:  5'- -cGGUGUGCGUggccACCGCcACGucGGAg -3'
miRNA:   3'- guCUACAUGCAau--UGGCGuUGC--UCUa -5'
21695 3' -47.5 NC_004812.1 + 4196 0.66 0.99976
Target:  5'- cCGGcgGgaacgGCGggGACCGCGGCGGc-- -3'
miRNA:   3'- -GUCuaCa----UGCaaUUGGCGUUGCUcua -5'
21695 3' -47.5 NC_004812.1 + 129705 0.66 0.99976
Target:  5'- cCGGcgGgaacgGCGggGACCGCGGCGGc-- -3'
miRNA:   3'- -GUCuaCa----UGCaaUUGGCGUUGCUcua -5'
21695 3' -47.5 NC_004812.1 + 82345 0.66 0.999693
Target:  5'- gCGGAcgGUGCGc-GGCCGgGGCGAGGc -3'
miRNA:   3'- -GUCUa-CAUGCaaUUGGCgUUGCUCUa -5'
21695 3' -47.5 NC_004812.1 + 79248 0.66 0.999612
Target:  5'- --aGUGUugGuUUGGCCGCGgcaGCGGGGa -3'
miRNA:   3'- gucUACAugC-AAUUGGCGU---UGCUCUa -5'
21695 3' -47.5 NC_004812.1 + 82739 0.66 0.999511
Target:  5'- gAGcUGUACGccgcccUGACCGCGACGAc-- -3'
miRNA:   3'- gUCuACAUGCa-----AUUGGCGUUGCUcua -5'
21695 3' -47.5 NC_004812.1 + 138453 0.66 0.999511
Target:  5'- uCAGGUgGUACGggGGCUGUcggGGCGGGGc -3'
miRNA:   3'- -GUCUA-CAUGCaaUUGGCG---UUGCUCUa -5'
21695 3' -47.5 NC_004812.1 + 155428 0.66 0.999511
Target:  5'- gCGGcgGcgACGgcGACgGCGACGAGGg -3'
miRNA:   3'- -GUCuaCa-UGCaaUUGgCGUUGCUCUa -5'
21695 3' -47.5 NC_004812.1 + 34693 0.67 0.999389
Target:  5'- gAGgcGUGCGUgAGCCagGCGACGAGc- -3'
miRNA:   3'- gUCuaCAUGCAaUUGG--CGUUGCUCua -5'
21695 3' -47.5 NC_004812.1 + 62849 0.67 0.999348
Target:  5'- gAGGUGgACGUggucGACCGCGccgaguguacuacuACGAGAc -3'
miRNA:   3'- gUCUACaUGCAa---UUGGCGU--------------UGCUCUa -5'
21695 3' -47.5 NC_004812.1 + 55361 0.67 0.999242
Target:  5'- cCGGGUccACGUgguGCCGCAgcaGCGAGGc -3'
miRNA:   3'- -GUCUAcaUGCAau-UGGCGU---UGCUCUa -5'
21695 3' -47.5 NC_004812.1 + 21132 0.68 0.998602
Target:  5'- gCGGccGUGUgugGCGU--GCCGCGGCGGGGg -3'
miRNA:   3'- -GUC--UACA---UGCAauUGGCGUUGCUCUa -5'
21695 3' -47.5 NC_004812.1 + 80585 0.68 0.998602
Target:  5'- uGGAg--GCGgcccugGACCGCGugGAGAa -3'
miRNA:   3'- gUCUacaUGCaa----UUGGCGUugCUCUa -5'
21695 3' -47.5 NC_004812.1 + 60858 0.68 0.998306
Target:  5'- -cGGUGUGCGc-GGCCGCcGCGAGc- -3'
miRNA:   3'- guCUACAUGCaaUUGGCGuUGCUCua -5'
21695 3' -47.5 NC_004812.1 + 61905 0.68 0.998306
Target:  5'- cCAGAUGUGCucgGGCCGCAcgcgccgccgcGCGGGc- -3'
miRNA:   3'- -GUCUACAUGcaaUUGGCGU-----------UGCUCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.