miRNA display CGI


Results 1 - 20 of 198 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21695 5' -52.2 NC_004812.1 + 136256 0.66 0.991943
Target:  5'- gCGACUUUGCGGaGGCGcGCuUUcgCCu -3'
miRNA:   3'- -GCUGGAGCGCCaCUGCuUGuAGuaGG- -5'
21695 5' -52.2 NC_004812.1 + 153324 0.66 0.991943
Target:  5'- gGACg-CGCGGUGGgccCGGGCggCGUCUc -3'
miRNA:   3'- gCUGgaGCGCCACU---GCUUGuaGUAGG- -5'
21695 5' -52.2 NC_004812.1 + 84910 0.66 0.991943
Target:  5'- -cGCCgcuGCGG-GGCGGGCAUCugcgCCa -3'
miRNA:   3'- gcUGGag-CGCCaCUGCUUGUAGua--GG- -5'
21695 5' -52.2 NC_004812.1 + 70471 0.66 0.991943
Target:  5'- cCGAUUgaguaGCGcGUGGCGG--GUCAUCCg -3'
miRNA:   3'- -GCUGGag---CGC-CACUGCUugUAGUAGG- -5'
21695 5' -52.2 NC_004812.1 + 122423 0.66 0.991943
Target:  5'- gGACg-CGCGGUGGgccCGGGCggCGUCUc -3'
miRNA:   3'- gCUGgaGCGCCACU---GCUUGuaGUAGG- -5'
21695 5' -52.2 NC_004812.1 + 61865 0.66 0.991611
Target:  5'- gCGGCCagCGCccggcgaccagaaaGGUGGCGAGgGggAUCCa -3'
miRNA:   3'- -GCUGGa-GCG--------------CCACUGCUUgUagUAGG- -5'
21695 5' -52.2 NC_004812.1 + 125310 0.66 0.990795
Target:  5'- aGGCCUgCGCGcGUGGgGGGCGgggCG-CCg -3'
miRNA:   3'- gCUGGA-GCGC-CACUgCUUGUa--GUaGG- -5'
21695 5' -52.2 NC_004812.1 + 33775 0.66 0.990795
Target:  5'- aCGGgCUCgGCGGccGACG-ACAUCGcCCg -3'
miRNA:   3'- -GCUgGAG-CGCCa-CUGCuUGUAGUaGG- -5'
21695 5' -52.2 NC_004812.1 + 113681 0.66 0.990795
Target:  5'- gCGugCUCGCGcucGACGAGCucugCGcCCg -3'
miRNA:   3'- -GCugGAGCGCca-CUGCUUGua--GUaGG- -5'
21695 5' -52.2 NC_004812.1 + 94217 0.66 0.990795
Target:  5'- aGACC-CGCGGggcgcgcuucaGGCGAcCGUCGUgCa -3'
miRNA:   3'- gCUGGaGCGCCa----------CUGCUuGUAGUAgG- -5'
21695 5' -52.2 NC_004812.1 + 156211 0.66 0.990795
Target:  5'- aGGCCUgCGCGcGUGGgGGGCGgggCG-CCg -3'
miRNA:   3'- gCUGGA-GCGC-CACUgCUUGUa--GUaGG- -5'
21695 5' -52.2 NC_004812.1 + 66302 0.66 0.990551
Target:  5'- -cGCCUCGCGGcUGGCGGcgcccaggcgccCGUCGcCCg -3'
miRNA:   3'- gcUGGAGCGCC-ACUGCUu-----------GUAGUaGG- -5'
21695 5' -52.2 NC_004812.1 + 100783 0.66 0.990427
Target:  5'- cCGAUCgUGCGGUGGCGGccucgggcccgaagACcUCGUUCu -3'
miRNA:   3'- -GCUGGaGCGCCACUGCU--------------UGuAGUAGG- -5'
21695 5' -52.2 NC_004812.1 + 85240 0.66 0.990047
Target:  5'- uGGCgUCGUgGGUGACGcaggacgagcuggccAGCGUCA-CCg -3'
miRNA:   3'- gCUGgAGCG-CCACUGC---------------UUGUAGUaGG- -5'
21695 5' -52.2 NC_004812.1 + 107090 0.66 0.989522
Target:  5'- uGACCUCGCc--GACGGGgGUCGUg- -3'
miRNA:   3'- gCUGGAGCGccaCUGCUUgUAGUAgg -5'
21695 5' -52.2 NC_004812.1 + 4560 0.66 0.989522
Target:  5'- uGGCCUCGCGGUcgGGCgcgaaGAGCAggcgCGUg- -3'
miRNA:   3'- gCUGGAGCGCCA--CUG-----CUUGUa---GUAgg -5'
21695 5' -52.2 NC_004812.1 + 10879 0.66 0.989522
Target:  5'- cCGACC-CGCGGgcgcugGACGcggaccACGUCG-CCu -3'
miRNA:   3'- -GCUGGaGCGCCa-----CUGCu-----UGUAGUaGG- -5'
21695 5' -52.2 NC_004812.1 + 31169 0.66 0.989522
Target:  5'- aGACC--GCGGcgauugGGCGGucCGUCGUCCg -3'
miRNA:   3'- gCUGGagCGCCa-----CUGCUu-GUAGUAGG- -5'
21695 5' -52.2 NC_004812.1 + 130068 0.66 0.989522
Target:  5'- uGGCCUCGCGGUcgGGCgcgaaGAGCAggcgCGUg- -3'
miRNA:   3'- gCUGGAGCGCCA--CUG-----CUUGUa---GUAgg -5'
21695 5' -52.2 NC_004812.1 + 20595 0.66 0.989522
Target:  5'- uGGCCcCGCGGgcggGGCGcccgcuCAgggCGUCCg -3'
miRNA:   3'- gCUGGaGCGCCa---CUGCuu----GUa--GUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.