miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21696 3' -55.9 NC_004812.1 + 101724 0.66 0.931755
Target:  5'- -aGCCGG-ACGGCGgcAUCGgCCCGcGGu -3'
miRNA:   3'- agCGGUCgUGCCGU--UAGCaGGGUaCC- -5'
21696 3' -55.9 NC_004812.1 + 153745 0.66 0.931755
Target:  5'- gUGCCGGCGC-GCAcggCGUCCUcgGc -3'
miRNA:   3'- aGCGGUCGUGcCGUua-GCAGGGuaCc -5'
21696 3' -55.9 NC_004812.1 + 108236 0.66 0.931755
Target:  5'- cUCGCCgGGCccgGCGGCGG-CGUCCgCGgcGGa -3'
miRNA:   3'- -AGCGG-UCG---UGCCGUUaGCAGG-GUa-CC- -5'
21696 3' -55.9 NC_004812.1 + 35530 0.66 0.931755
Target:  5'- cCGUCAGCAUGGCGcgCGgggggCgCGggcgGGg -3'
miRNA:   3'- aGCGGUCGUGCCGUuaGCa----GgGUa---CC- -5'
21696 3' -55.9 NC_004812.1 + 3311 0.66 0.931755
Target:  5'- -gGCgAGCGCGGCGcgCcaggCCUcgGGg -3'
miRNA:   3'- agCGgUCGUGCCGUuaGca--GGGuaCC- -5'
21696 3' -55.9 NC_004812.1 + 128819 0.66 0.931755
Target:  5'- -gGCgAGCGCGGCGcgCcaggCCUcgGGg -3'
miRNA:   3'- agCGgUCGUGCCGUuaGca--GGGuaCC- -5'
21696 3' -55.9 NC_004812.1 + 122844 0.66 0.931755
Target:  5'- gUGCCGGCGC-GCAcggCGUCCUcgGc -3'
miRNA:   3'- aGCGGUCGUGcCGUua-GCAGGGuaCc -5'
21696 3' -55.9 NC_004812.1 + 135558 0.66 0.931755
Target:  5'- aCGUCAGCcCGGCGgagAUCGUCgcgcUCAUGc -3'
miRNA:   3'- aGCGGUCGuGCCGU---UAGCAG----GGUACc -5'
21696 3' -55.9 NC_004812.1 + 60358 0.66 0.931755
Target:  5'- -gGCCGGCAgGGCGGcCccCUCGUGGu -3'
miRNA:   3'- agCGGUCGUgCCGUUaGcaGGGUACC- -5'
21696 3' -55.9 NC_004812.1 + 140421 0.66 0.931755
Target:  5'- cCGCCGcGCGCugcuGGCGAUCGagcgccCCCAgucGGg -3'
miRNA:   3'- aGCGGU-CGUG----CCGUUAGCa-----GGGUa--CC- -5'
21696 3' -55.9 NC_004812.1 + 120467 0.66 0.931755
Target:  5'- gCGCCGcCACGGCcaa---CCCGUGGg -3'
miRNA:   3'- aGCGGUcGUGCCGuuagcaGGGUACC- -5'
21696 3' -55.9 NC_004812.1 + 48245 0.66 0.931755
Target:  5'- -gGCCuccugcAGCGCGGCGacGUCGUCCgCGc-- -3'
miRNA:   3'- agCGG------UCGUGCCGU--UAGCAGG-GUacc -5'
21696 3' -55.9 NC_004812.1 + 105220 0.66 0.931755
Target:  5'- gCGCCGGCGgcCGGCg--CcUCCCAcugcUGGg -3'
miRNA:   3'- aGCGGUCGU--GCCGuuaGcAGGGU----ACC- -5'
21696 3' -55.9 NC_004812.1 + 106163 0.66 0.931755
Target:  5'- gCGuCCGGCugGGCcGUCGggcgggUUCCGcUGGa -3'
miRNA:   3'- aGC-GGUCGugCCGuUAGC------AGGGU-ACC- -5'
21696 3' -55.9 NC_004812.1 + 106680 0.66 0.931755
Target:  5'- aCGUagauCGGCACcgGGCGGUCGgcgucgggCCCcgGGg -3'
miRNA:   3'- aGCG----GUCGUG--CCGUUAGCa-------GGGuaCC- -5'
21696 3' -55.9 NC_004812.1 + 140468 0.66 0.931755
Target:  5'- -aGCCGGCACGGC---CGccCCCAccacgGGg -3'
miRNA:   3'- agCGGUCGUGCCGuuaGCa-GGGUa----CC- -5'
21696 3' -55.9 NC_004812.1 + 27345 0.66 0.928674
Target:  5'- gUCGCCGGCGCcgccgcgccgcugcuGGCGcgCGgCCCGc-- -3'
miRNA:   3'- -AGCGGUCGUG---------------CCGUuaGCaGGGUacc -5'
21696 3' -55.9 NC_004812.1 + 44813 0.66 0.928674
Target:  5'- cUCGCCAcGCGCaGCAgaAUCucgcagcccaccgccGUCCCgAUGGc -3'
miRNA:   3'- -AGCGGU-CGUGcCGU--UAG---------------CAGGG-UACC- -5'
21696 3' -55.9 NC_004812.1 + 152853 0.66 0.928674
Target:  5'- gUCGCCGGCGCcgccgcgccgcugcuGGCGcgCGgCCCGc-- -3'
miRNA:   3'- -AGCGGUCGUG---------------CCGUuaGCaGGGUacc -5'
21696 3' -55.9 NC_004812.1 + 1455 0.66 0.926574
Target:  5'- -gGCCgGGCACGGCGGcgacgccggCGUCCUcgGcGg -3'
miRNA:   3'- agCGG-UCGUGCCGUUa--------GCAGGGuaC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.