miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21696 5' -54.8 NC_004812.1 + 58797 0.66 0.949272
Target:  5'- gGCCGccUGCAUACCgGCcacgcgGUUCUUGGc -3'
miRNA:   3'- gCGGUa-GCGUAUGGgCGa-----CAAGGACU- -5'
21696 5' -54.8 NC_004812.1 + 63273 0.66 0.949272
Target:  5'- gGUCAUCcagaucuCGUGCCUGCUGUacgaCCUGGc -3'
miRNA:   3'- gCGGUAGc------GUAUGGGCGACAa---GGACU- -5'
21696 5' -54.8 NC_004812.1 + 80229 0.66 0.944915
Target:  5'- gGCCAUCGCGcGCCUcgGCgc--CCUGGg -3'
miRNA:   3'- gCGGUAGCGUaUGGG--CGacaaGGACU- -5'
21696 5' -54.8 NC_004812.1 + 150736 0.66 0.944915
Target:  5'- gCGCCcgCGCcccccgGCCCGCgcccaUGUUCCc-- -3'
miRNA:   3'- -GCGGuaGCGua----UGGGCG-----ACAAGGacu -5'
21696 5' -54.8 NC_004812.1 + 119835 0.66 0.944915
Target:  5'- gCGCCcgCGCcccccgGCCCGCgcccaUGUUCCc-- -3'
miRNA:   3'- -GCGGuaGCGua----UGGGCG-----ACAAGGacu -5'
21696 5' -54.8 NC_004812.1 + 144638 0.66 0.935484
Target:  5'- gCGCCAUCGCGU-CCCGggGaugUCUGc -3'
miRNA:   3'- -GCGGUAGCGUAuGGGCgaCaa-GGACu -5'
21696 5' -54.8 NC_004812.1 + 126273 0.66 0.930406
Target:  5'- aCGCCGcUgGCGUucgaGCUCGCggggccGUUCCUGGu -3'
miRNA:   3'- -GCGGU-AgCGUA----UGGGCGa-----CAAGGACU- -5'
21696 5' -54.8 NC_004812.1 + 32067 0.66 0.930406
Target:  5'- gCGUCGUCGCGggGCCCGUgGggCCcGGc -3'
miRNA:   3'- -GCGGUAGCGUa-UGGGCGaCaaGGaCU- -5'
21696 5' -54.8 NC_004812.1 + 29262 0.66 0.925086
Target:  5'- cCGCC-UCGUGUucgagauCCCGCUGUUCagcGAc -3'
miRNA:   3'- -GCGGuAGCGUAu------GGGCGACAAGga-CU- -5'
21696 5' -54.8 NC_004812.1 + 87871 0.66 0.925086
Target:  5'- gGCguUCGCGUcuGCCCGCgg-UCCUcGGg -3'
miRNA:   3'- gCGguAGCGUA--UGGGCGacaAGGA-CU- -5'
21696 5' -54.8 NC_004812.1 + 137796 0.66 0.925086
Target:  5'- cCGCCcgcCGCAcACCCGCcccgCCUGGa -3'
miRNA:   3'- -GCGGua-GCGUaUGGGCGacaaGGACU- -5'
21696 5' -54.8 NC_004812.1 + 130974 0.66 0.925086
Target:  5'- cCGCCcgCGCG---CUGCUGUUCCg-- -3'
miRNA:   3'- -GCGGuaGCGUaugGGCGACAAGGacu -5'
21696 5' -54.8 NC_004812.1 + 116403 0.66 0.923993
Target:  5'- gGCgGUCGCcgAUCCGCUGcgggcccgcgcCCUGGg -3'
miRNA:   3'- gCGgUAGCGuaUGGGCGACaa---------GGACU- -5'
21696 5' -54.8 NC_004812.1 + 104888 0.67 0.919523
Target:  5'- uCGCCGUCGCcgucGCCguggcgcaggCGCUcUUCCUGGc -3'
miRNA:   3'- -GCGGUAGCGua--UGG----------GCGAcAAGGACU- -5'
21696 5' -54.8 NC_004812.1 + 61549 0.67 0.919523
Target:  5'- gGCgGUCGCGUAgCCGCUcGcgCCggGAc -3'
miRNA:   3'- gCGgUAGCGUAUgGGCGA-CaaGGa-CU- -5'
21696 5' -54.8 NC_004812.1 + 59556 0.67 0.913718
Target:  5'- uCGCaGUCGCuGUACgCGCUGUUCaUGGu -3'
miRNA:   3'- -GCGgUAGCG-UAUGgGCGACAAGgACU- -5'
21696 5' -54.8 NC_004812.1 + 94093 0.67 0.913718
Target:  5'- cCGCCcgcUCGCGUGCgCC-CUGgcCCUGGu -3'
miRNA:   3'- -GCGGu--AGCGUAUG-GGcGACaaGGACU- -5'
21696 5' -54.8 NC_004812.1 + 23391 0.67 0.90393
Target:  5'- uCGCCAcgaUCGCcgcccucaacuuCCCGCUGUccgccccuggcgUCCUGGu -3'
miRNA:   3'- -GCGGU---AGCGuau---------GGGCGACA------------AGGACU- -5'
21696 5' -54.8 NC_004812.1 + 32778 0.67 0.901388
Target:  5'- uCGcCCGUCGCGUgcGCCCGgguCUGggCCUcGAc -3'
miRNA:   3'- -GC-GGUAGCGUA--UGGGC---GACaaGGA-CU- -5'
21696 5' -54.8 NC_004812.1 + 119134 0.67 0.901388
Target:  5'- uCGCC--CGCAgacGCCCGCcGUUCUUGc -3'
miRNA:   3'- -GCGGuaGCGUa--UGGGCGaCAAGGACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.