miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21696 5' -54.8 NC_004812.1 + 23391 0.67 0.90393
Target:  5'- uCGCCAcgaUCGCcgcccucaacuuCCCGCUGUccgccccuggcgUCCUGGu -3'
miRNA:   3'- -GCGGU---AGCGuau---------GGGCGACA------------AGGACU- -5'
21696 5' -54.8 NC_004812.1 + 26900 0.68 0.888113
Target:  5'- aCGCCGcCGCGgucCCCGCcGUUCCc-- -3'
miRNA:   3'- -GCGGUaGCGUau-GGGCGaCAAGGacu -5'
21696 5' -54.8 NC_004812.1 + 27406 0.69 0.817665
Target:  5'- cCGCCGcCGCcgACCUGCUcUUCCaGAa -3'
miRNA:   3'- -GCGGUaGCGuaUGGGCGAcAAGGaCU- -5'
21696 5' -54.8 NC_004812.1 + 27891 0.68 0.858854
Target:  5'- cCGCCG-CGCGccucggGCCCGCUGcgCCg-- -3'
miRNA:   3'- -GCGGUaGCGUa-----UGGGCGACaaGGacu -5'
21696 5' -54.8 NC_004812.1 + 28798 0.69 0.826277
Target:  5'- gGCCGUgGCGcggcGCCUGCUGUUuaauagCCUGGu -3'
miRNA:   3'- gCGGUAgCGUa---UGGGCGACAA------GGACU- -5'
21696 5' -54.8 NC_004812.1 + 29262 0.66 0.925086
Target:  5'- cCGCC-UCGUGUucgagauCCCGCUGUUCagcGAc -3'
miRNA:   3'- -GCGGuAGCGUAu------GGGCGACAAGga-CU- -5'
21696 5' -54.8 NC_004812.1 + 32067 0.66 0.930406
Target:  5'- gCGUCGUCGCGggGCCCGUgGggCCcGGc -3'
miRNA:   3'- -GCGGUAGCGUa-UGGGCGaCaaGGaCU- -5'
21696 5' -54.8 NC_004812.1 + 32778 0.67 0.901388
Target:  5'- uCGcCCGUCGCGUgcGCCCGgguCUGggCCUcGAc -3'
miRNA:   3'- -GC-GGUAGCGUA--UGGGC---GACaaGGA-CU- -5'
21696 5' -54.8 NC_004812.1 + 41492 0.68 0.851005
Target:  5'- aGUCGUCGCgccGUGCCUGCUGcUCgacgCUGAc -3'
miRNA:   3'- gCGGUAGCG---UAUGGGCGACaAG----GACU- -5'
21696 5' -54.8 NC_004812.1 + 49314 0.68 0.866495
Target:  5'- gCGCCAacuaCGUAgGCCCGCUGUaCCg-- -3'
miRNA:   3'- -GCGGUa---GCGUaUGGGCGACAaGGacu -5'
21696 5' -54.8 NC_004812.1 + 52317 0.67 0.898808
Target:  5'- cCGCCGUCGCccgccggcgacgGCCCGUcGcUCUUGAg -3'
miRNA:   3'- -GCGGUAGCGua----------UGGGCGaCaAGGACU- -5'
21696 5' -54.8 NC_004812.1 + 53348 0.67 0.894867
Target:  5'- gGCCGUCGCc--CCCGCgcg-CCUGc -3'
miRNA:   3'- gCGGUAGCGuauGGGCGacaaGGACu -5'
21696 5' -54.8 NC_004812.1 + 56256 0.69 0.826277
Target:  5'- gCGCCGgaacCGUGgcCCCGCgGUUCCUGc -3'
miRNA:   3'- -GCGGUa---GCGUauGGGCGaCAAGGACu -5'
21696 5' -54.8 NC_004812.1 + 56272 0.68 0.866495
Target:  5'- gCGCCucgccCGCGgcgGCCCGCUcgaGggCCUGGu -3'
miRNA:   3'- -GCGGua---GCGUa--UGGGCGA---CaaGGACU- -5'
21696 5' -54.8 NC_004812.1 + 58797 0.66 0.949272
Target:  5'- gGCCGccUGCAUACCgGCcacgcgGUUCUUGGc -3'
miRNA:   3'- gCGGUa-GCGUAUGGgCGa-----CAAGGACU- -5'
21696 5' -54.8 NC_004812.1 + 59556 0.67 0.913718
Target:  5'- uCGCaGUCGCuGUACgCGCUGUUCaUGGu -3'
miRNA:   3'- -GCGgUAGCG-UAUGgGCGACAAGgACU- -5'
21696 5' -54.8 NC_004812.1 + 61549 0.67 0.919523
Target:  5'- gGCgGUCGCGUAgCCGCUcGcgCCggGAc -3'
miRNA:   3'- gCGgUAGCGUAUgGGCGA-CaaGGa-CU- -5'
21696 5' -54.8 NC_004812.1 + 62082 0.68 0.873922
Target:  5'- cCGCCGUC-CG-ACCCGCg---CCUGAc -3'
miRNA:   3'- -GCGGUAGcGUaUGGGCGacaaGGACU- -5'
21696 5' -54.8 NC_004812.1 + 63273 0.66 0.949272
Target:  5'- gGUCAUCcagaucuCGUGCCUGCUGUacgaCCUGGc -3'
miRNA:   3'- gCGGUAGc------GUAUGGGCGACAa---GGACU- -5'
21696 5' -54.8 NC_004812.1 + 72958 0.67 0.901388
Target:  5'- gGCCAUCGCGgccuuUCUGCUG-UCCa-- -3'
miRNA:   3'- gCGGUAGCGUau---GGGCGACaAGGacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.