miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 89241 0.66 0.990129
Target:  5'- aCAGCGGgGU--CUUCGGCGgGgacGACa -3'
miRNA:   3'- gGUCGCCgCGuaGAAGCUGUgCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 115453 0.66 0.990129
Target:  5'- cCUGGCGGCGCGccgCUgggcUCGccgcGCGCGUGc- -3'
miRNA:   3'- -GGUCGCCGCGUa--GA----AGC----UGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 76835 0.66 0.990129
Target:  5'- uCCGGgGGCGCGcCUgcgCGGCGuCGggcaGGCa -3'
miRNA:   3'- -GGUCgCCGCGUaGAa--GCUGU-GCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 7925 0.66 0.990129
Target:  5'- gCuGCGGCGCG-CgcCGGCGCGgccggggGGCg -3'
miRNA:   3'- gGuCGCCGCGUaGaaGCUGUGCa------UUG- -5'
21697 3' -52.1 NC_004812.1 + 38826 0.66 0.990129
Target:  5'- gCuGCGGCGCG-CgcCGGCGCGgccggggGGCg -3'
miRNA:   3'- gGuCGCCGCGUaGaaGCUGUGCa------UUG- -5'
21697 3' -52.1 NC_004812.1 + 152976 0.66 0.990129
Target:  5'- gCgGGCGGCGCcgCgcgcccgcCGGCGCGcaAGCg -3'
miRNA:   3'- -GgUCGCCGCGuaGaa------GCUGUGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 141836 0.66 0.990129
Target:  5'- uCC-GCGGCccgGUCUUCGAgcaggGCGUGACg -3'
miRNA:   3'- -GGuCGCCGcg-UAGAAGCUg----UGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 13970 0.66 0.990129
Target:  5'- aCAGgGGCGCAgcc-CGGcCGCGUAcuGCg -3'
miRNA:   3'- gGUCgCCGCGUagaaGCU-GUGCAU--UG- -5'
21697 3' -52.1 NC_004812.1 + 105828 0.66 0.990129
Target:  5'- gCCGGCGGCGgcgcgggguuCAUC-UCGGCcuCGggGACg -3'
miRNA:   3'- -GGUCGCCGC----------GUAGaAGCUGu-GCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 117347 0.66 0.990129
Target:  5'- cCCGGCGGcCGC-----CGACGCGguggGGCg -3'
miRNA:   3'- -GGUCGCC-GCGuagaaGCUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 145405 0.66 0.990129
Target:  5'- gCCGGCGcGCGCGgg--CGugGCGg--- -3'
miRNA:   3'- -GGUCGC-CGCGUagaaGCugUGCauug -5'
21697 3' -52.1 NC_004812.1 + 104059 0.66 0.990129
Target:  5'- cUCGGCGGUGCcgGUCggaCGACGgGggGGCg -3'
miRNA:   3'- -GGUCGCCGCG--UAGaa-GCUGUgCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 148248 0.66 0.990129
Target:  5'- cCCGGCGGcCGC-----CGACGCGguggGGCg -3'
miRNA:   3'- -GGUCGCC-GCGuagaaGCUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 27468 0.66 0.990129
Target:  5'- gCgGGCGGCGCcgCgcgcccgcCGGCGCGcaAGCg -3'
miRNA:   3'- -GgUCGCCGCGuaGaa------GCUGUGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 42202 0.66 0.989999
Target:  5'- cCCGcGCGGUgucgaggGCGUCUUCGGCcugccacgacGCGUucaGGCa -3'
miRNA:   3'- -GGU-CGCCG-------CGUAGAAGCUG----------UGCA---UUG- -5'
21697 3' -52.1 NC_004812.1 + 74351 0.66 0.989329
Target:  5'- gCCuGCGGCGCGcgcuggugggggaguUCgagUCGGCcgaACGgcGCu -3'
miRNA:   3'- -GGuCGCCGCGU---------------AGa--AGCUG---UGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 98222 0.66 0.988768
Target:  5'- gCGGCGGcCGCcugGUCUccgCGGgGCGgcGCg -3'
miRNA:   3'- gGUCGCC-GCG---UAGAa--GCUgUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 54772 0.66 0.988768
Target:  5'- aCGGCGGCGC-UCguggcCGACcuaGCGggGGCg -3'
miRNA:   3'- gGUCGCCGCGuAGaa---GCUG---UGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 138185 0.66 0.988768
Target:  5'- aCGGgGGCGUgguUCUggaacagCGACACG-GACg -3'
miRNA:   3'- gGUCgCCGCGu--AGAa------GCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 85334 0.66 0.988768
Target:  5'- cCUGGCGGCGacuuUCggCGGCGCGccccgAGCc -3'
miRNA:   3'- -GGUCGCCGCgu--AGaaGCUGUGCa----UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.