miRNA display CGI


Results 21 - 40 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 85352 0.66 0.983803
Target:  5'- cCCGGCGuGCGCGUUcaUCGACcuggACGccgAGCu -3'
miRNA:   3'- -GGUCGC-CGCGUAGa-AGCUG----UGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 130987 0.66 0.985614
Target:  5'- gCCAGCuGGCGCGgg---GACACGgcgGCg -3'
miRNA:   3'- -GGUCG-CCGCGUagaagCUGUGCau-UG- -5'
21697 3' -52.1 NC_004812.1 + 19531 0.66 0.985088
Target:  5'- aCCGcGCGGCGCcgguGUCgaugcggaccgucagCGACGCGgccGACg -3'
miRNA:   3'- -GGU-CGCCGCG----UAGaa-------------GCUGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 145405 0.66 0.990129
Target:  5'- gCCGGCGcGCGCGgg--CGugGCGg--- -3'
miRNA:   3'- -GGUCGC-CGCGUagaaGCugUGCauug -5'
21697 3' -52.1 NC_004812.1 + 87487 0.66 0.987266
Target:  5'- gCCGGCcGgGuCGUCUUCGGC-CGcGACa -3'
miRNA:   3'- -GGUCGcCgC-GUAGAAGCUGuGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 141836 0.66 0.990129
Target:  5'- uCC-GCGGCccgGUCUUCGAgcaggGCGUGACg -3'
miRNA:   3'- -GGuCGCCGcg-UAGAAGCUg----UGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 137001 0.66 0.987266
Target:  5'- -aGGCGGCGCGagcgaUUCGcCGCGgcuGCa -3'
miRNA:   3'- ggUCGCCGCGUag---AAGCuGUGCau-UG- -5'
21697 3' -52.1 NC_004812.1 + 7925 0.66 0.990129
Target:  5'- gCuGCGGCGCG-CgcCGGCGCGgccggggGGCg -3'
miRNA:   3'- gGuCGCCGCGUaGaaGCUGUGCa------UUG- -5'
21697 3' -52.1 NC_004812.1 + 13970 0.66 0.990129
Target:  5'- aCAGgGGCGCAgcc-CGGcCGCGUAcuGCg -3'
miRNA:   3'- gGUCgCCGCGUagaaGCU-GUGCAU--UG- -5'
21697 3' -52.1 NC_004812.1 + 2735 0.66 0.981824
Target:  5'- --cGCGGCGCAgg-UCG-CGCGcGGCg -3'
miRNA:   3'- gguCGCCGCGUagaAGCuGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 72487 0.66 0.981824
Target:  5'- gCGGCGGCGCcUCggggUCGggggGCGCGccGCc -3'
miRNA:   3'- gGUCGCCGCGuAGa---AGC----UGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 76115 0.66 0.983803
Target:  5'- gCGGCGGCgGCcUCgagcucgUCGGCGCGccGCc -3'
miRNA:   3'- gGUCGCCG-CGuAGa------AGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 139401 0.66 0.985614
Target:  5'- uCCAGCGGCaccgGCcgCgaaCGACACcggGGCg -3'
miRNA:   3'- -GGUCGCCG----CGuaGaa-GCUGUGca-UUG- -5'
21697 3' -52.1 NC_004812.1 + 128904 0.66 0.983803
Target:  5'- gCGGCGGCGgAgggCgcCGGCGUGUGGCu -3'
miRNA:   3'- gGUCGCCGCgUa--GaaGCUGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 136060 0.66 0.987266
Target:  5'- aUCAGCGGCGCGgccacgCgccgcaggUCGGC-CG-AGCg -3'
miRNA:   3'- -GGUCGCCGCGUa-----Ga-------AGCUGuGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 80288 0.66 0.985614
Target:  5'- gCGGCgGGCGCGUCc-CGAaGCGUAu- -3'
miRNA:   3'- gGUCG-CCGCGUAGaaGCUgUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 128243 0.66 0.981824
Target:  5'- --cGCGGCGCAgg-UCG-CGCGcGGCg -3'
miRNA:   3'- gguCGCCGCGUagaAGCuGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 377 0.66 0.985614
Target:  5'- gCCGcCGGCGCAUCccgCGGCGCc---- -3'
miRNA:   3'- -GGUcGCCGCGUAGaa-GCUGUGcauug -5'
21697 3' -52.1 NC_004812.1 + 98312 0.66 0.985614
Target:  5'- uCCGGCGGCGCGcgggugCUggcuCGCGUAc- -3'
miRNA:   3'- -GGUCGCCGCGUa-----GAagcuGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 100511 0.66 0.985614
Target:  5'- gCAGCGGCGUGUaggCGccCACGUcgGGCg -3'
miRNA:   3'- gGUCGCCGCGUAgaaGCu-GUGCA--UUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.