miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 153911 0.66 0.987266
Target:  5'- uCCGGCcgcgucuucgGGCccgGCGUCUUCGcGCGCGUcgaGGCc -3'
miRNA:   3'- -GGUCG----------CCG---CGUAGAAGC-UGUGCA---UUG- -5'
21697 3' -52.1 NC_004812.1 + 137001 0.66 0.987266
Target:  5'- -aGGCGGCGCGagcgaUUCGcCGCGgcuGCa -3'
miRNA:   3'- ggUCGCCGCGUag---AAGCuGUGCau-UG- -5'
21697 3' -52.1 NC_004812.1 + 136060 0.66 0.987266
Target:  5'- aUCAGCGGCGCGgccacgCgccgcaggUCGGC-CG-AGCg -3'
miRNA:   3'- -GGUCGCCGCGUa-----Ga-------AGCUGuGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 120722 0.66 0.987266
Target:  5'- cCCuGCGGCGCA-CggcccccCGGCGCGcagagAACa -3'
miRNA:   3'- -GGuCGCCGCGUaGaa-----GCUGUGCa----UUG- -5'
21697 3' -52.1 NC_004812.1 + 80288 0.66 0.985614
Target:  5'- gCGGCgGGCGCGUCc-CGAaGCGUAu- -3'
miRNA:   3'- gGUCG-CCGCGUAGaaGCUgUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 377 0.66 0.985614
Target:  5'- gCCGcCGGCGCAUCccgCGGCGCc---- -3'
miRNA:   3'- -GGUcGCCGCGUAGaa-GCUGUGcauug -5'
21697 3' -52.1 NC_004812.1 + 139401 0.66 0.985614
Target:  5'- uCCAGCGGCaccgGCcgCgaaCGACACcggGGCg -3'
miRNA:   3'- -GGUCGCCG----CGuaGaa-GCUGUGca-UUG- -5'
21697 3' -52.1 NC_004812.1 + 69652 0.66 0.981824
Target:  5'- cUCGGCGGCGaagGUCUgcgguUUGGCGCGccGCu -3'
miRNA:   3'- -GGUCGCCGCg--UAGA-----AGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 107631 0.66 0.983803
Target:  5'- gUCuGCGGcCGCGUCgcggGGCACGUcGCc -3'
miRNA:   3'- -GGuCGCC-GCGUAGaag-CUGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 109943 0.67 0.97733
Target:  5'- uCCGgcGCGGCGCccuggCGGC-CGUGGCg -3'
miRNA:   3'- -GGU--CGCCGCGuagaaGCUGuGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 88044 0.67 0.979444
Target:  5'- cCCcGCGGUcccguccGCGUCgucucgCGAgACGUAGCu -3'
miRNA:   3'- -GGuCGCCG-------CGUAGaa----GCUgUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 105169 0.67 0.969129
Target:  5'- gCGGgGGuCGCGUg--CGGCugGUGGCg -3'
miRNA:   3'- gGUCgCC-GCGUAgaaGCUGugCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 23391 0.67 0.969129
Target:  5'- cCCGGCGGgcgaGCGUCcggCGACggGCGUccGGCg -3'
miRNA:   3'- -GGUCGCCg---CGUAGaa-GCUG--UGCA--UUG- -5'
21697 3' -52.1 NC_004812.1 + 26202 0.67 0.969129
Target:  5'- gCGGCGGCGCG-CgcgCGcCGcCGUGGCc -3'
miRNA:   3'- gGUCGCCGCGUaGaa-GCuGU-GCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 55537 0.67 0.972067
Target:  5'- gCCAcGCGGCGCGcCUcaCG-UACGUGGCc -3'
miRNA:   3'- -GGU-CGCCGCGUaGAa-GCuGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 58763 0.67 0.972067
Target:  5'- gCCGGCGGCGCccggCgagCGaggGCGCGgugGGCu -3'
miRNA:   3'- -GGUCGCCGCGua--Gaa-GC---UGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 42344 0.67 0.974799
Target:  5'- gUCGGCGccGCGgGUCUUCGGgGCGg--- -3'
miRNA:   3'- -GGUCGC--CGCgUAGAAGCUgUGCauug -5'
21697 3' -52.1 NC_004812.1 + 94662 0.67 0.974799
Target:  5'- gCGGCGGC-CGUUgguuuuuaUCGACGCGgguGCg -3'
miRNA:   3'- gGUCGCCGcGUAGa-------AGCUGUGCau-UG- -5'
21697 3' -52.1 NC_004812.1 + 153975 0.67 0.974799
Target:  5'- gCAGaCGGCGCAggUCUcgCGGgGCGggGCc -3'
miRNA:   3'- gGUC-GCCGCGU--AGAa-GCUgUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 116473 0.67 0.97733
Target:  5'- gCGGCGGCGgAUagCUUCGcCGCGg--- -3'
miRNA:   3'- gGUCGCCGCgUA--GAAGCuGUGCauug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.