miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 123074 0.67 0.974799
Target:  5'- gCAGaCGGCGCAggUCUcgCGGgGCGggGCc -3'
miRNA:   3'- gGUC-GCCGCGU--AGAa-GCUgUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 121783 0.67 0.974799
Target:  5'- gCAGCGaGgGCcgCUUgGGCccucGCGUGGCg -3'
miRNA:   3'- gGUCGC-CgCGuaGAAgCUG----UGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 25072 0.67 0.979669
Target:  5'- gCGGCGGCGgGcUCcUCGACgggGCGgcGCc -3'
miRNA:   3'- gGUCGCCGCgU-AGaAGCUG---UGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 56204 0.67 0.979669
Target:  5'- gCCucGCGGCGCAUCgaccucCGGC-CgGUGGCc -3'
miRNA:   3'- -GGu-CGCCGCGUAGaa----GCUGuG-CAUUG- -5'
21697 3' -52.1 NC_004812.1 + 58763 0.67 0.972067
Target:  5'- gCCGGCGGCGCccggCgagCGaggGCGCGgugGGCu -3'
miRNA:   3'- -GGUCGCCGCGua--Gaa-GC---UGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 94662 0.67 0.974799
Target:  5'- gCGGCGGC-CGUUgguuuuuaUCGACGCGgguGCg -3'
miRNA:   3'- gGUCGCCGcGUAGa-------AGCUGUGCau-UG- -5'
21697 3' -52.1 NC_004812.1 + 116473 0.67 0.97733
Target:  5'- gCGGCGGCGgAUagCUUCGcCGCGg--- -3'
miRNA:   3'- gGUCGCCGCgUA--GAAGCuGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 42344 0.67 0.974799
Target:  5'- gUCGGCGccGCGgGUCUUCGGgGCGg--- -3'
miRNA:   3'- -GGUCGC--CGCgUAGAAGCUgUGCauug -5'
21697 3' -52.1 NC_004812.1 + 55537 0.67 0.972067
Target:  5'- gCCAcGCGGCGCGcCUcaCG-UACGUGGCc -3'
miRNA:   3'- -GGU-CGCCGCGUaGAa-GCuGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 29601 0.67 0.969129
Target:  5'- gCGGCGGCGCGggc-CGGC-CGgcGCu -3'
miRNA:   3'- gGUCGCCGCGUagaaGCUGuGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 38769 0.67 0.979669
Target:  5'- gUAGCGGCGCccCgcgCGuCGCGUcGCg -3'
miRNA:   3'- gGUCGCCGCGuaGaa-GCuGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 26202 0.67 0.969129
Target:  5'- gCGGCGGCGCG-CgcgCGcCGcCGUGGCc -3'
miRNA:   3'- gGUCGCCGCGUaGaa-GCuGU-GCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 100141 0.67 0.974799
Target:  5'- -uGGCGGCGCGggCggCGGgGCGggGCu -3'
miRNA:   3'- ggUCGCCGCGUa-GaaGCUgUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 54928 0.67 0.974799
Target:  5'- aCCAGCGG-GCAgUCggagUCG-UACGUGAg -3'
miRNA:   3'- -GGUCGCCgCGU-AGa---AGCuGUGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 44815 0.67 0.972067
Target:  5'- gCGGgGGCGCuGUCccgcaUCGACA-GUGACa -3'
miRNA:   3'- gGUCgCCGCG-UAGa----AGCUGUgCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 99482 0.67 0.972067
Target:  5'- gCGGCGGCGUAcCUggcgGACugGgcGCc -3'
miRNA:   3'- gGUCGCCGCGUaGAag--CUGugCauUG- -5'
21697 3' -52.1 NC_004812.1 + 23391 0.67 0.969129
Target:  5'- cCCGGCGGgcgaGCGUCcggCGACggGCGUccGGCg -3'
miRNA:   3'- -GGUCGCCg---CGUAGaa-GCUG--UGCA--UUG- -5'
21697 3' -52.1 NC_004812.1 + 71459 0.67 0.979669
Target:  5'- cUCGGCGaGCGCGUCca-GGCGCGc--- -3'
miRNA:   3'- -GGUCGC-CGCGUAGaagCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 29920 0.67 0.979669
Target:  5'- gCGGCGGCGaCggCgaCGGCGCGagggAGCg -3'
miRNA:   3'- gGUCGCCGC-GuaGaaGCUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 88044 0.67 0.979444
Target:  5'- cCCcGCGGUcccguccGCGUCgucucgCGAgACGUAGCu -3'
miRNA:   3'- -GGuCGCCG-------CGUAGaa----GCUgUGCAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.