miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 112130 1.13 0.004431
Target:  5'- uCCAGCGGCGCAUCUUCGACACGUAACg -3'
miRNA:   3'- -GGUCGCCGCGUAGAAGCUGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 20190 0.83 0.308709
Target:  5'- gCgAGCgGGCGCGUCUUCGagaggacGCACGUGGCg -3'
miRNA:   3'- -GgUCG-CCGCGUAGAAGC-------UGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 81637 0.79 0.469821
Target:  5'- aCGcGCGGCGCGUCUUCGAgGCGc--- -3'
miRNA:   3'- gGU-CGCCGCGUAGAAGCUgUGCauug -5'
21697 3' -52.1 NC_004812.1 + 71062 0.77 0.559131
Target:  5'- cCCuGCGGCGguUCgggCGGCGCGggGCg -3'
miRNA:   3'- -GGuCGCCGCguAGaa-GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 30399 0.77 0.579704
Target:  5'- uCCGGgGGCGCGgcggcCUUCaGGCACGUGAa -3'
miRNA:   3'- -GGUCgCCGCGUa----GAAG-CUGUGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 107623 0.76 0.631688
Target:  5'- gCCAgGCGGCGCAUUUU-GGCGCGgugGGCc -3'
miRNA:   3'- -GGU-CGCCGCGUAGAAgCUGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 106526 0.76 0.652539
Target:  5'- gCCGGCGGcCGCGgcgcCUUCGuCACGUAc- -3'
miRNA:   3'- -GGUCGCC-GCGUa---GAAGCuGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 18541 0.75 0.673323
Target:  5'- -aGGCGGCGCAUgg-CGGCGCGUuGCc -3'
miRNA:   3'- ggUCGCCGCGUAgaaGCUGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 62356 0.75 0.683667
Target:  5'- gCCcGCGGCGCGUgggUCGGCGCG-AACc -3'
miRNA:   3'- -GGuCGCCGCGUAga-AGCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 41162 0.75 0.690882
Target:  5'- cCCAGCGGCGCGccgccaggcgcUCUcggcgccgcgccggUCGGCGCGccGCg -3'
miRNA:   3'- -GGUCGCCGCGU-----------AGA--------------AGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 94267 0.75 0.704214
Target:  5'- uCCGGCGGgGCGUCcucgUCGAgCGCGcggGGCg -3'
miRNA:   3'- -GGUCGCCgCGUAGa---AGCU-GUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 19884 0.74 0.714397
Target:  5'- uCCAGCGGCGCGg---CGGCGgGgGACg -3'
miRNA:   3'- -GGUCGCCGCGUagaaGCUGUgCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 111558 0.74 0.724507
Target:  5'- aCCAGCGGCGCugcAUgUUCGGCGUGgugAGCc -3'
miRNA:   3'- -GGUCGCCGCG---UAgAAGCUGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 55633 0.74 0.724507
Target:  5'- uUCuGgGGCGCGUCUUCGACGuCcUGGCg -3'
miRNA:   3'- -GGuCgCCGCGUAGAAGCUGU-GcAUUG- -5'
21697 3' -52.1 NC_004812.1 + 115255 0.74 0.734535
Target:  5'- cCCGGUGGUGCGUggUUGAgGCGUAGg -3'
miRNA:   3'- -GGUCGCCGCGUAgaAGCUgUGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 70541 0.73 0.764025
Target:  5'- gCCAGCGcGCuGCGaccggugCUUCG-CACGUAGCg -3'
miRNA:   3'- -GGUCGC-CG-CGUa------GAAGCuGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 32495 0.73 0.773624
Target:  5'- gUCGGCGGCGUaccgcguuGUCggCGGCACG-AGCu -3'
miRNA:   3'- -GGUCGCCGCG--------UAGaaGCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 43484 0.73 0.783092
Target:  5'- cCCAggucGCGGCGCGUC-UCGguGCGCGUcAGCc -3'
miRNA:   3'- -GGU----CGCCGCGUAGaAGC--UGUGCA-UUG- -5'
21697 3' -52.1 NC_004812.1 + 4857 0.73 0.790566
Target:  5'- gCGGCGGCGCGgccgugaagCGGCcCGUGGCg -3'
miRNA:   3'- gGUCGCCGCGUagaa-----GCUGuGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 130365 0.73 0.790566
Target:  5'- gCGGCGGCGCGgccgugaagCGGCcCGUGGCg -3'
miRNA:   3'- gGUCGCCGCGUagaa-----GCUGuGCAUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.