miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 83477 0.73 0.801598
Target:  5'- gCGGCGGCGCGccggaUCccgCGGCccGCGUGACc -3'
miRNA:   3'- gGUCGCCGCGU-----AGaa-GCUG--UGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 2514 0.72 0.810616
Target:  5'- gUCGGCGGCGCGgccgUCGAgCGCGggcAGCa -3'
miRNA:   3'- -GGUCGCCGCGUaga-AGCU-GUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 128022 0.72 0.810616
Target:  5'- gUCGGCGGCGCGgccgUCGAgCGCGggcAGCa -3'
miRNA:   3'- -GGUCGCCGCGUaga-AGCU-GUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 45196 0.72 0.810616
Target:  5'- cCCGGCGGCGCGgc--CGGCAgCGaGACg -3'
miRNA:   3'- -GGUCGCCGCGUagaaGCUGU-GCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 103370 0.72 0.819466
Target:  5'- uCCAGCGGCaCGUCaaCGACAUGcuggGGCg -3'
miRNA:   3'- -GGUCGCCGcGUAGaaGCUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 97132 0.72 0.819466
Target:  5'- gCGGCGGCGCGccUCUccgCGGuCGCGUGGu -3'
miRNA:   3'- gGUCGCCGCGU--AGAa--GCU-GUGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 12892 0.72 0.822957
Target:  5'- uUCAGCGGCGC-UCggugcccccggggCGGCGCGgcgAGCg -3'
miRNA:   3'- -GGUCGCCGCGuAGaa-----------GCUGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 3910 0.72 0.8341
Target:  5'- gCGGCGGCGCGgcggCggggccgcgcggcggCGGCACGgcGCg -3'
miRNA:   3'- gGUCGCCGCGUa---Gaa-------------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 129418 0.72 0.8341
Target:  5'- gCGGCGGCGCGgcggCggggccgcgcggcggCGGCACGgcGCg -3'
miRNA:   3'- gGUCGCCGCGUa---Gaa-------------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 97558 0.72 0.836627
Target:  5'- uCCAGcCGGUGCugcgcCGGCGCGUGAUg -3'
miRNA:   3'- -GGUC-GCCGCGuagaaGCUGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 115416 0.72 0.836627
Target:  5'- cCCGcGCGGCGCGcCgacCGGCGCGgcGCc -3'
miRNA:   3'- -GGU-CGCCGCGUaGaa-GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 134240 0.72 0.836627
Target:  5'- gCUGGCGGCGCG-CUUUGcCGCGUcaGGCc -3'
miRNA:   3'- -GGUCGCCGCGUaGAAGCuGUGCA--UUG- -5'
21697 3' -52.1 NC_004812.1 + 108396 0.72 0.844921
Target:  5'- -aGGCGGCGCucgAUCUcaacCGGCACGUcGGCg -3'
miRNA:   3'- ggUCGCCGCG---UAGAa---GCUGUGCA-UUG- -5'
21697 3' -52.1 NC_004812.1 + 128685 0.72 0.844921
Target:  5'- gUCGGCgaccuGGCGCAUCcaggcggCGGCGCGgcGCa -3'
miRNA:   3'- -GGUCG-----CCGCGUAGaa-----GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 100549 0.72 0.844921
Target:  5'- --cGCGGCGCGagCUcCGGCACGaGACg -3'
miRNA:   3'- gguCGCCGCGUa-GAaGCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 3176 0.72 0.844921
Target:  5'- gUCGGCgaccuGGCGCAUCcaggcggCGGCGCGgcGCa -3'
miRNA:   3'- -GGUCG-----CCGCGUAGaa-----GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 118086 0.71 0.853015
Target:  5'- cCCGGCcgccGCGCGUCUcCGGCGCGa--- -3'
miRNA:   3'- -GGUCGc---CGCGUAGAaGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 90610 0.71 0.853015
Target:  5'- cCCGGCGGCGaUGUCgggcgUCGugAUGUGc- -3'
miRNA:   3'- -GGUCGCCGC-GUAGa----AGCugUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 148987 0.71 0.853015
Target:  5'- cCCGGCcgccGCGCGUCUcCGGCGCGa--- -3'
miRNA:   3'- -GGUCGc---CGCGUAGAaGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 15003 0.71 0.860902
Target:  5'- gCCAGCugcaGGcCGCgGUCUUCGGCGCGcuGCu -3'
miRNA:   3'- -GGUCG----CC-GCG-UAGAAGCUGUGCauUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.