Results 41 - 60 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21697 | 3' | -52.1 | NC_004812.1 | + | 89957 | 0.71 | 0.860902 |
Target: 5'- gCGGCGGCGCGcCUccCGACGCGc--- -3' miRNA: 3'- gGUCGCCGCGUaGAa-GCUGUGCauug -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 15003 | 0.71 | 0.860902 |
Target: 5'- gCCAGCugcaGGcCGCgGUCUUCGGCGCGcuGCu -3' miRNA: 3'- -GGUCG----CC-GCG-UAGAAGCUGUGCauUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 156054 | 0.71 | 0.860902 |
Target: 5'- aCgGGCGG-GCGUCgcgCGGCGCGUcGCc -3' miRNA: 3'- -GgUCGCCgCGUAGaa-GCUGUGCAuUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 65378 | 0.71 | 0.868573 |
Target: 5'- aCGGUGGCGCGga-UCGACGCGcuccGCg -3' miRNA: 3'- gGUCGCCGCGUagaAGCUGUGCau--UG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 119237 | 0.71 | 0.868573 |
Target: 5'- gCGGgGGUGCG-CUUCGAcCGCGUGuACg -3' miRNA: 3'- gGUCgCCGCGUaGAAGCU-GUGCAU-UG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 69445 | 0.71 | 0.868573 |
Target: 5'- gCAcGCGGCGCAUCcucugUCG-CGCGgccgAGCa -3' miRNA: 3'- gGU-CGCCGCGUAGa----AGCuGUGCa---UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 127694 | 0.71 | 0.876024 |
Target: 5'- gCGGCGGCGuCGUCgucgUCGGCgagcaGCGUGu- -3' miRNA: 3'- gGUCGCCGC-GUAGa---AGCUG-----UGCAUug -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 2185 | 0.71 | 0.876024 |
Target: 5'- gCGGCGGCGuCGUCgucgUCGGCgagcaGCGUGu- -3' miRNA: 3'- gGUCGCCGC-GUAGa---AGCUG-----UGCAUug -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 128153 | 0.71 | 0.883249 |
Target: 5'- gCGGCGGCGCGUCcggguagaGGCGCGcgcaGGCg -3' miRNA: 3'- gGUCGCCGCGUAGaag-----CUGUGCa---UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 2645 | 0.71 | 0.883249 |
Target: 5'- gCGGCGGCGCGUCcggguagaGGCGCGcgcaGGCg -3' miRNA: 3'- gGUCGCCGCGUAGaag-----CUGUGCa---UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 15981 | 0.7 | 0.897 |
Target: 5'- gCGGCGGCGCGUCUaCaGCACcgguGCa -3' miRNA: 3'- gGUCGCCGCGUAGAaGcUGUGcau-UG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 93121 | 0.7 | 0.897 |
Target: 5'- uCgGGCGGCgGCGUCUgCGugACGUucgucGCg -3' miRNA: 3'- -GgUCGCCG-CGUAGAaGCugUGCAu----UG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 4405 | 0.7 | 0.902234 |
Target: 5'- gCCGGCGGCcaugGCGUagcccaggugCGGCACGgcGCg -3' miRNA: 3'- -GGUCGCCG----CGUAgaa-------GCUGUGCauUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 129913 | 0.7 | 0.902234 |
Target: 5'- gCCGGCGGCcaugGCGUagcccaggugCGGCACGgcGCg -3' miRNA: 3'- -GGUCGCCG----CGUAgaa-------GCUGUGCauUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 3291 | 0.7 | 0.903518 |
Target: 5'- gCCAGCGcGCGCGggUCgaaggCGAgCGCGgcGCg -3' miRNA: 3'- -GGUCGC-CGCGU--AGaa---GCU-GUGCauUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 5840 | 0.7 | 0.903518 |
Target: 5'- gCCGGCGGCGCGcUCgggaGGCGgGgggAACa -3' miRNA: 3'- -GGUCGCCGCGU-AGaag-CUGUgCa--UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 128799 | 0.7 | 0.903518 |
Target: 5'- gCCAGCGcGCGCGggUCgaaggCGAgCGCGgcGCg -3' miRNA: 3'- -GGUCGC-CGCGU--AGaa---GCU-GUGCauUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 36741 | 0.7 | 0.903518 |
Target: 5'- gCCGGCGGCGCGcUCgggaGGCGgGgggAACa -3' miRNA: 3'- -GGUCGCCGCGU-AGaag-CUGUgCa--UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 67981 | 0.7 | 0.903518 |
Target: 5'- gCCGGCGGCGCA-CUggGGCGCc---- -3' miRNA: 3'- -GGUCGCCGCGUaGAagCUGUGcauug -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 94388 | 0.7 | 0.909794 |
Target: 5'- gCGGCGGCGUAcgCggCGGCG-GUGGCg -3' miRNA: 3'- gGUCGCCGCGUa-GaaGCUGUgCAUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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