miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 39704 0.69 0.937468
Target:  5'- cCCAGCaGCGCGUCgaaCuGCACGUcguACa -3'
miRNA:   3'- -GGUCGcCGCGUAGaa-GcUGUGCAu--UG- -5'
21697 3' -52.1 NC_004812.1 + 62674 0.69 0.937468
Target:  5'- -gGGaCGGCGCGUCgcCGuGCACGUGuACg -3'
miRNA:   3'- ggUC-GCCGCGUAGaaGC-UGUGCAU-UG- -5'
21697 3' -52.1 NC_004812.1 + 30351 0.69 0.94226
Target:  5'- gCCAGCGGCGUcgCgUCGAgcCGCucGGCg -3'
miRNA:   3'- -GGUCGCCGCGuaGaAGCU--GUGcaUUG- -5'
21697 3' -52.1 NC_004812.1 + 48060 0.69 0.94226
Target:  5'- aCCAGCGaGCGCAgcgacUCgccgGGCGCGUAc- -3'
miRNA:   3'- -GGUCGC-CGCGU-----AGaag-CUGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 64156 0.69 0.94226
Target:  5'- aCGGCGGCGCGgcgggCUcCG-CGCGggagGGCg -3'
miRNA:   3'- gGUCGCCGCGUa----GAaGCuGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 92642 0.69 0.94226
Target:  5'- gCCGGCgaGGCGCAgca--GGCACGUGuACa -3'
miRNA:   3'- -GGUCG--CCGCGUagaagCUGUGCAU-UG- -5'
21697 3' -52.1 NC_004812.1 + 9210 0.69 0.946807
Target:  5'- gCCGGUGGCGuCAcCUggCGAUACGaGGCc -3'
miRNA:   3'- -GGUCGCCGC-GUaGAa-GCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 73839 0.69 0.946807
Target:  5'- cCCAGCGGCacccgacucgcGCGUCagcgUCGuCGCGgucagGGCg -3'
miRNA:   3'- -GGUCGCCG-----------CGUAGa---AGCuGUGCa----UUG- -5'
21697 3' -52.1 NC_004812.1 + 94699 0.69 0.946807
Target:  5'- gCGGCGGCGCGUg--CGGCcCG-AGCa -3'
miRNA:   3'- gGUCGCCGCGUAgaaGCUGuGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 100646 0.68 0.95027
Target:  5'- cCUGGCGGCGCuggacauggUCGACGCGc--- -3'
miRNA:   3'- -GGUCGCCGCGuaga-----AGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 56809 0.68 0.951111
Target:  5'- --cGCGGCGCAgCUggCGGCGCGccGCc -3'
miRNA:   3'- gguCGCCGCGUaGAa-GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 128169 0.68 0.951111
Target:  5'- --cGCGGCGCugcgUCGGCGCcUGGCg -3'
miRNA:   3'- gguCGCCGCGuagaAGCUGUGcAUUG- -5'
21697 3' -52.1 NC_004812.1 + 143415 0.68 0.951111
Target:  5'- cCCGGC-GUGCAUCaUCGuCuGCGUAGCc -3'
miRNA:   3'- -GGUCGcCGCGUAGaAGCuG-UGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 30917 0.68 0.951111
Target:  5'- cCCGGCGGCGCG-CgcgCGAaaaaaaCGCGcGGCg -3'
miRNA:   3'- -GGUCGCCGCGUaGaa-GCU------GUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 15126 0.68 0.952356
Target:  5'- aCGGCGGCGCccccgacggcgacGUCgcagccgUCGccgagcgaguguacgACACGUGGCg -3'
miRNA:   3'- gGUCGCCGCG-------------UAGa------AGC---------------UGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 47259 0.68 0.955176
Target:  5'- cCCGGUGGCcgaGUCUaCGGCGCcccgGUAGCg -3'
miRNA:   3'- -GGUCGCCGcg-UAGAaGCUGUG----CAUUG- -5'
21697 3' -52.1 NC_004812.1 + 20008 0.68 0.955176
Target:  5'- --cGCGGCGcCGUCUcCGcGCGCGUcGCg -3'
miRNA:   3'- gguCGCCGC-GUAGAaGC-UGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 56681 0.68 0.955176
Target:  5'- gCGGCGucgacGCGCAUCUUCGGCGg----- -3'
miRNA:   3'- gGUCGC-----CGCGUAGAAGCUGUgcauug -5'
21697 3' -52.1 NC_004812.1 + 19620 0.68 0.955176
Target:  5'- gCCAGCcGCGCGUCcggucucgCGGCgACGUGGg -3'
miRNA:   3'- -GGUCGcCGCGUAGaa------GCUG-UGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 156425 0.68 0.958633
Target:  5'- cCCGGCGGCGCG-CgcgCGAaaauaaaCGCGcGGCg -3'
miRNA:   3'- -GGUCGCCGCGUaGaa-GCU-------GUGCaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.