miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 15 0.68 0.958633
Target:  5'- cCCGGCGGCGCG-CgcgCGAaaauaaaCGCGcGGCg -3'
miRNA:   3'- -GGUCGCCGCGUaGaa-GCU-------GUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 377 0.66 0.985614
Target:  5'- gCCGcCGGCGCAUCccgCGGCGCc---- -3'
miRNA:   3'- -GGUcGCCGCGUAGaa-GCUGUGcauug -5'
21697 3' -52.1 NC_004812.1 + 1463 0.68 0.965649
Target:  5'- aCGGCGGCgacgccgGCGUCcUCGGCGgGcGGCg -3'
miRNA:   3'- gGUCGCCG-------CGUAGaAGCUGUgCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 2185 0.71 0.876024
Target:  5'- gCGGCGGCGuCGUCgucgUCGGCgagcaGCGUGu- -3'
miRNA:   3'- gGUCGCCGC-GUAGa---AGCUG-----UGCAUug -5'
21697 3' -52.1 NC_004812.1 + 2514 0.72 0.810616
Target:  5'- gUCGGCGGCGCGgccgUCGAgCGCGggcAGCa -3'
miRNA:   3'- -GGUCGCCGCGUaga-AGCU-GUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 2645 0.71 0.883249
Target:  5'- gCGGCGGCGCGUCcggguagaGGCGCGcgcaGGCg -3'
miRNA:   3'- gGUCGCCGCGUAGaag-----CUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 2735 0.66 0.981824
Target:  5'- --cGCGGCGCAgg-UCG-CGCGcGGCg -3'
miRNA:   3'- gguCGCCGCGUagaAGCuGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 3176 0.72 0.844921
Target:  5'- gUCGGCgaccuGGCGCAUCcaggcggCGGCGCGgcGCa -3'
miRNA:   3'- -GGUCG-----CCGCGUAGaa-----GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 3291 0.7 0.903518
Target:  5'- gCCAGCGcGCGCGggUCgaaggCGAgCGCGgcGCg -3'
miRNA:   3'- -GGUCGC-CGCGU--AGaa---GCU-GUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 3396 0.66 0.983803
Target:  5'- gCGGCGGCGgAgggCgcCGGCGUGUGGCu -3'
miRNA:   3'- gGUCGCCGCgUa--GaaGCUGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 3757 0.69 0.927142
Target:  5'- gCAGCGGCGCGg---CGGCGCcggcGACg -3'
miRNA:   3'- gGUCGCCGCGUagaaGCUGUGca--UUG- -5'
21697 3' -52.1 NC_004812.1 + 3910 0.72 0.8341
Target:  5'- gCGGCGGCGCGgcggCggggccgcgcggcggCGGCACGgcGCg -3'
miRNA:   3'- gGUCGCCGCGUa---Gaa-------------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 4405 0.7 0.902234
Target:  5'- gCCGGCGGCcaugGCGUagcccaggugCGGCACGgcGCg -3'
miRNA:   3'- -GGUCGCCG----CGUAgaa-------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 4857 0.73 0.790566
Target:  5'- gCGGCGGCGCGgccgugaagCGGCcCGUGGCg -3'
miRNA:   3'- gGUCGCCGCGUagaa-----GCUGuGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 5479 0.66 0.985614
Target:  5'- gCCAGCuGGCGCGgg---GACACGgcgGCg -3'
miRNA:   3'- -GGUCG-CCGCGUagaagCUGUGCau-UG- -5'
21697 3' -52.1 NC_004812.1 + 5840 0.7 0.903518
Target:  5'- gCCGGCGGCGCGcUCgggaGGCGgGgggAACa -3'
miRNA:   3'- -GGUCGCCGCGU-AGaag-CUGUgCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 7254 0.67 0.968823
Target:  5'- aCCGGCGGCGUcccccGUCgccuagcaaCGACggaucaccccguuGCGUAACu -3'
miRNA:   3'- -GGUCGCCGCG-----UAGaa-------GCUG-------------UGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 7868 0.67 0.979669
Target:  5'- gUAGCGGCGCccCgcgCGuCGCGUcGCg -3'
miRNA:   3'- gGUCGCCGCGuaGaa-GCuGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 7925 0.66 0.990129
Target:  5'- gCuGCGGCGCG-CgcCGGCGCGgccggggGGCg -3'
miRNA:   3'- gGuCGCCGCGUaGaaGCUGUGCa------UUG- -5'
21697 3' -52.1 NC_004812.1 + 9210 0.69 0.946807
Target:  5'- gCCGGUGGCGuCAcCUggCGAUACGaGGCc -3'
miRNA:   3'- -GGUCGCCGC-GUaGAa-GCUGUGCaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.