miRNA display CGI


Results 21 - 40 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 10735 0.66 0.988768
Target:  5'- gCGGCGGgGCGgcaacggCggCGACGCGccuGCg -3'
miRNA:   3'- gGUCGCCgCGUa------GaaGCUGUGCau-UG- -5'
21697 3' -52.1 NC_004812.1 + 12365 0.66 0.988768
Target:  5'- cCCuGCGaGCGCGUgaUCGuCAUGgcgAGCa -3'
miRNA:   3'- -GGuCGC-CGCGUAgaAGCuGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 12892 0.72 0.822957
Target:  5'- uUCAGCGGCGC-UCggugcccccggggCGGCGCGgcgAGCg -3'
miRNA:   3'- -GGUCGCCGCGuAGaa-----------GCUGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 13278 0.67 0.969129
Target:  5'- -gGGCGGCGgAggCcUCGGCGCGgcggGGCg -3'
miRNA:   3'- ggUCGCCGCgUa-GaAGCUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 13970 0.66 0.990129
Target:  5'- aCAGgGGCGCAgcc-CGGcCGCGUAcuGCg -3'
miRNA:   3'- gGUCgCCGCGUagaaGCU-GUGCAU--UG- -5'
21697 3' -52.1 NC_004812.1 + 13983 0.68 0.962604
Target:  5'- cCCGGCGGCcaggaGCGagUcCGACACGaGGCu -3'
miRNA:   3'- -GGUCGCCG-----CGUagAaGCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 15003 0.71 0.860902
Target:  5'- gCCAGCugcaGGcCGCgGUCUUCGGCGCGcuGCu -3'
miRNA:   3'- -GGUCG----CC-GCG-UAGAAGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 15126 0.68 0.952356
Target:  5'- aCGGCGGCGCccccgacggcgacGUCgcagccgUCGccgagcgaguguacgACACGUGGCg -3'
miRNA:   3'- gGUCGCCGCG-------------UAGa------AGC---------------UGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 15443 0.68 0.965976
Target:  5'- -gAGCuGGCGCGcgcCUUCGACuCGgcGCg -3'
miRNA:   3'- ggUCG-CCGCGUa--GAAGCUGuGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 15981 0.7 0.897
Target:  5'- gCGGCGGCGCGUCUaCaGCACcgguGCa -3'
miRNA:   3'- gGUCGCCGCGUAGAaGcUGUGcau-UG- -5'
21697 3' -52.1 NC_004812.1 + 18541 0.75 0.673323
Target:  5'- -aGGCGGCGCAUgg-CGGCGCGUuGCc -3'
miRNA:   3'- ggUCGCCGCGUAgaaGCUGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 19531 0.66 0.985088
Target:  5'- aCCGcGCGGCGCcgguGUCgaugcggaccgucagCGACGCGgccGACg -3'
miRNA:   3'- -GGU-CGCCGCG----UAGaa-------------GCUGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 19620 0.68 0.955176
Target:  5'- gCCAGCcGCGCGUCcggucucgCGGCgACGUGGg -3'
miRNA:   3'- -GGUCGcCGCGUAGaa------GCUG-UGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 19884 0.74 0.714397
Target:  5'- uCCAGCGGCGCGg---CGGCGgGgGACg -3'
miRNA:   3'- -GGUCGCCGCGUagaaGCUGUgCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 20008 0.68 0.955176
Target:  5'- --cGCGGCGcCGUCUcCGcGCGCGUcGCg -3'
miRNA:   3'- gguCGCCGC-GUAGAaGC-UGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 20190 0.83 0.308709
Target:  5'- gCgAGCgGGCGCGUCUUCGagaggacGCACGUGGCg -3'
miRNA:   3'- -GgUCG-CCGCGUAGAAGC-------UGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 21627 0.7 0.909794
Target:  5'- cCCGGCGGCGC-UCggcCGAgCugGUGu- -3'
miRNA:   3'- -GGUCGCCGCGuAGaa-GCU-GugCAUug -5'
21697 3' -52.1 NC_004812.1 + 22089 0.67 0.979669
Target:  5'- aCCAGCuGCGCGUUggCgGugGCGUccauGGCg -3'
miRNA:   3'- -GGUCGcCGCGUAGaaG-CugUGCA----UUG- -5'
21697 3' -52.1 NC_004812.1 + 22271 0.66 0.985614
Target:  5'- cCCGGgGcGCGCGUCuUUCGGagcgaGgGUGACc -3'
miRNA:   3'- -GGUCgC-CGCGUAG-AAGCUg----UgCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 23391 0.67 0.969129
Target:  5'- cCCGGCGGgcgaGCGUCcggCGACggGCGUccGGCg -3'
miRNA:   3'- -GGUCGCCg---CGUAGaa-GCUG--UGCA--UUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.