miRNA display CGI


Results 61 - 80 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 42344 0.67 0.974799
Target:  5'- gUCGGCGccGCGgGUCUUCGGgGCGg--- -3'
miRNA:   3'- -GGUCGC--CGCgUAGAAGCUgUGCauug -5'
21697 3' -52.1 NC_004812.1 + 43484 0.73 0.783092
Target:  5'- cCCAggucGCGGCGCGUC-UCGguGCGCGUcAGCc -3'
miRNA:   3'- -GGU----CGCCGCGUAGaAGC--UGUGCA-UUG- -5'
21697 3' -52.1 NC_004812.1 + 44030 0.68 0.965976
Target:  5'- uCCGGCGGCcgcGCGUCacCuGCGCGUcgGACg -3'
miRNA:   3'- -GGUCGCCG---CGUAGaaGcUGUGCA--UUG- -5'
21697 3' -52.1 NC_004812.1 + 44211 0.7 0.915824
Target:  5'- gCGGCGGCGCGgacgggCGaACGCGUGu- -3'
miRNA:   3'- gGUCGCCGCGUagaa--GC-UGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 44815 0.67 0.972067
Target:  5'- gCGGgGGCGCuGUCccgcaUCGACA-GUGACa -3'
miRNA:   3'- gGUCgCCGCG-UAGa----AGCUGUgCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 44925 0.7 0.921607
Target:  5'- gCCAGCGGCcaCGUCgcCGACgACGgggAGCg -3'
miRNA:   3'- -GGUCGCCGc-GUAGaaGCUG-UGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 45196 0.72 0.810616
Target:  5'- cCCGGCGGCGCGgc--CGGCAgCGaGACg -3'
miRNA:   3'- -GGUCGCCGCGUagaaGCUGU-GCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 47259 0.68 0.955176
Target:  5'- cCCGGUGGCcgaGUCUaCGGCGCcccgGUAGCg -3'
miRNA:   3'- -GGUCGCCGcg-UAGAaGCUGUG----CAUUG- -5'
21697 3' -52.1 NC_004812.1 + 48060 0.69 0.94226
Target:  5'- aCCAGCGaGCGCAgcgacUCgccgGGCGCGUAc- -3'
miRNA:   3'- -GGUCGC-CGCGU-----AGaag-CUGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 48591 0.67 0.968823
Target:  5'- aCCGGCGGCGacgcggccgcggcCAUCcggaCGACGCGcguGCg -3'
miRNA:   3'- -GGUCGCCGC-------------GUAGaa--GCUGUGCau-UG- -5'
21697 3' -52.1 NC_004812.1 + 50181 0.67 0.972067
Target:  5'- gCCAGCGcCGCgAUCUUCGAgcgcCGCGg--- -3'
miRNA:   3'- -GGUCGCcGCG-UAGAAGCU----GUGCauug -5'
21697 3' -52.1 NC_004812.1 + 54609 0.69 0.932429
Target:  5'- gCGGCGGCGCcgCgagUCG-CGCGa--- -3'
miRNA:   3'- gGUCGCCGCGuaGa--AGCuGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 54744 0.68 0.962604
Target:  5'- gCCGGCgcggGGcCGCAUCcccgCGGCGCGcgGGCg -3'
miRNA:   3'- -GGUCG----CC-GCGUAGaa--GCUGUGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 54772 0.66 0.988768
Target:  5'- aCGGCGGCGC-UCguggcCGACcuaGCGggGGCg -3'
miRNA:   3'- gGUCGCCGCGuAGaa---GCUG---UGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 54928 0.67 0.974799
Target:  5'- aCCAGCGG-GCAgUCggagUCG-UACGUGAg -3'
miRNA:   3'- -GGUCGCCgCGU-AGa---AGCuGUGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 55537 0.67 0.972067
Target:  5'- gCCAcGCGGCGCGcCUcaCG-UACGUGGCc -3'
miRNA:   3'- -GGU-CGCCGCGUaGAa-GCuGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 55633 0.74 0.724507
Target:  5'- uUCuGgGGCGCGUCUUCGACGuCcUGGCg -3'
miRNA:   3'- -GGuCgCCGCGUAGAAGCUGU-GcAUUG- -5'
21697 3' -52.1 NC_004812.1 + 55813 0.66 0.988768
Target:  5'- gCCAgcacGCGGCGCAgcgccUCUUCGuCGCucuGCu -3'
miRNA:   3'- -GGU----CGCCGCGU-----AGAAGCuGUGcauUG- -5'
21697 3' -52.1 NC_004812.1 + 56102 0.67 0.969129
Target:  5'- gUCGGCGaaCGCGUCcauggUCGACugGUGGg -3'
miRNA:   3'- -GGUCGCc-GCGUAGa----AGCUGugCAUUg -5'
21697 3' -52.1 NC_004812.1 + 56204 0.67 0.979669
Target:  5'- gCCucGCGGCGCAUCgaccucCGGC-CgGUGGCc -3'
miRNA:   3'- -GGu-CGCCGCGUAGaa----GCUGuG-CAUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.