miRNA display CGI


Results 81 - 100 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 56217 0.67 0.972067
Target:  5'- uCCAGCaGgGCGUCggccucgCGGCGCGccGACu -3'
miRNA:   3'- -GGUCGcCgCGUAGaa-----GCUGUGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 56323 0.68 0.962604
Target:  5'- -gGGCGGCGCGUCcgugcUCGGCccccgggcccGgGUGGCg -3'
miRNA:   3'- ggUCGCCGCGUAGa----AGCUG----------UgCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 56681 0.68 0.955176
Target:  5'- gCGGCGucgacGCGCAUCUUCGGCGg----- -3'
miRNA:   3'- gGUCGC-----CGCGUAGAAGCUGUgcauug -5'
21697 3' -52.1 NC_004812.1 + 56809 0.68 0.951111
Target:  5'- --cGCGGCGCAgCUggCGGCGCGccGCc -3'
miRNA:   3'- gguCGCCGCGUaGAa-GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 57220 0.66 0.985614
Target:  5'- cCCAGCcGcCGCAgCgcCGACACGgcGCu -3'
miRNA:   3'- -GGUCGcC-GCGUaGaaGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 58763 0.67 0.972067
Target:  5'- gCCGGCGGCGCccggCgagCGaggGCGCGgugGGCu -3'
miRNA:   3'- -GGUCGCCGCGua--Gaa-GC---UGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 60834 0.67 0.979669
Target:  5'- gCCGGCgGGCGCGcUCgcagaGGCGCGUc-- -3'
miRNA:   3'- -GGUCG-CCGCGU-AGaag--CUGUGCAuug -5'
21697 3' -52.1 NC_004812.1 + 61109 0.66 0.985614
Target:  5'- -aGGCGGCGCcccg-CGGCGCGccGGCg -3'
miRNA:   3'- ggUCGCCGCGuagaaGCUGUGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 62146 0.69 0.930869
Target:  5'- aUCGGCGGCGCGggcggccuccggguUCUUCGGgccCGCGg--- -3'
miRNA:   3'- -GGUCGCCGCGU--------------AGAAGCU---GUGCauug -5'
21697 3' -52.1 NC_004812.1 + 62356 0.75 0.683667
Target:  5'- gCCcGCGGCGCGUgggUCGGCGCG-AACc -3'
miRNA:   3'- -GGuCGCCGCGUAga-AGCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 62674 0.69 0.937468
Target:  5'- -gGGaCGGCGCGUCgcCGuGCACGUGuACg -3'
miRNA:   3'- ggUC-GCCGCGUAGaaGC-UGUGCAU-UG- -5'
21697 3' -52.1 NC_004812.1 + 64156 0.69 0.94226
Target:  5'- aCGGCGGCGCGgcgggCUcCG-CGCGggagGGCg -3'
miRNA:   3'- gGUCGCCGCGUa----GAaGCuGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 65378 0.71 0.868573
Target:  5'- aCGGUGGCGCGga-UCGACGCGcuccGCg -3'
miRNA:   3'- gGUCGCCGCGUagaAGCUGUGCau--UG- -5'
21697 3' -52.1 NC_004812.1 + 67350 0.67 0.97733
Target:  5'- gCGGCcuGCGCGUCccacgccugCGACACcGUGGCg -3'
miRNA:   3'- gGUCGc-CGCGUAGaa-------GCUGUG-CAUUG- -5'
21697 3' -52.1 NC_004812.1 + 67736 0.66 0.987108
Target:  5'- gCAGCguguuggGGCGCAgcgUCUcgccgUCG-CGCGUGACc -3'
miRNA:   3'- gGUCG-------CCGCGU---AGA-----AGCuGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 67981 0.7 0.903518
Target:  5'- gCCGGCGGCGCA-CUggGGCGCc---- -3'
miRNA:   3'- -GGUCGCCGCGUaGAagCUGUGcauug -5'
21697 3' -52.1 NC_004812.1 + 69445 0.71 0.868573
Target:  5'- gCAcGCGGCGCAUCcucugUCG-CGCGgccgAGCa -3'
miRNA:   3'- gGU-CGCCGCGUAGa----AGCuGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 69652 0.66 0.981824
Target:  5'- cUCGGCGGCGaagGUCUgcgguUUGGCGCGccGCu -3'
miRNA:   3'- -GGUCGCCGCg--UAGA-----AGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 70541 0.73 0.764025
Target:  5'- gCCAGCGcGCuGCGaccggugCUUCG-CACGUAGCg -3'
miRNA:   3'- -GGUCGC-CG-CGUa------GAAGCuGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 71062 0.77 0.559131
Target:  5'- cCCuGCGGCGguUCgggCGGCGCGggGCg -3'
miRNA:   3'- -GGuCGCCGCguAGaa-GCUGUGCauUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.