miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 120722 0.66 0.987266
Target:  5'- cCCuGCGGCGCA-CggcccccCGGCGCGcagagAACa -3'
miRNA:   3'- -GGuCGCCGCGUaGaa-----GCUGUGCa----UUG- -5'
21697 3' -52.1 NC_004812.1 + 120382 0.66 0.987266
Target:  5'- gCCGGgGGCGCGUacgcgggCGAcCGCGagGGCg -3'
miRNA:   3'- -GGUCgCCGCGUAgaa----GCU-GUGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 119237 0.71 0.868573
Target:  5'- gCGGgGGUGCG-CUUCGAcCGCGUGuACg -3'
miRNA:   3'- gGUCgCCGCGUaGAAGCU-GUGCAU-UG- -5'
21697 3' -52.1 NC_004812.1 + 118086 0.71 0.853015
Target:  5'- cCCGGCcgccGCGCGUCUcCGGCGCGa--- -3'
miRNA:   3'- -GGUCGc---CGCGUAGAaGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 117485 0.7 0.921607
Target:  5'- cCCGGCcgccgGGCGCGUC--CGACGCGg--- -3'
miRNA:   3'- -GGUCG-----CCGCGUAGaaGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 117347 0.66 0.990129
Target:  5'- cCCGGCGGcCGC-----CGACGCGguggGGCg -3'
miRNA:   3'- -GGUCGCC-GCGuagaaGCUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 116473 0.67 0.97733
Target:  5'- gCGGCGGCGgAUagCUUCGcCGCGg--- -3'
miRNA:   3'- gGUCGCCGCgUA--GAAGCuGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 116338 0.66 0.981824
Target:  5'- gCGGCGGCGCAggagacCUUCGGuCcCGacgGACu -3'
miRNA:   3'- gGUCGCCGCGUa-----GAAGCU-GuGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 115453 0.66 0.990129
Target:  5'- cCUGGCGGCGCGccgCUgggcUCGccgcGCGCGUGc- -3'
miRNA:   3'- -GGUCGCCGCGUa--GA----AGC----UGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 115416 0.72 0.836627
Target:  5'- cCCGcGCGGCGCGcCgacCGGCGCGgcGCc -3'
miRNA:   3'- -GGU-CGCCGCGUaGaa-GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 115255 0.74 0.734535
Target:  5'- cCCGGUGGUGCGUggUUGAgGCGUAGg -3'
miRNA:   3'- -GGUCGCCGCGUAgaAGCUgUGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 114518 0.68 0.965976
Target:  5'- uCCGG-GGCGCGUCgggUCGGCG---GACg -3'
miRNA:   3'- -GGUCgCCGCGUAGa--AGCUGUgcaUUG- -5'
21697 3' -52.1 NC_004812.1 + 112130 1.13 0.004431
Target:  5'- uCCAGCGGCGCAUCUUCGACACGUAACg -3'
miRNA:   3'- -GGUCGCCGCGUAGAAGCUGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 111558 0.74 0.724507
Target:  5'- aCCAGCGGCGCugcAUgUUCGGCGUGgugAGCc -3'
miRNA:   3'- -GGUCGCCGCG---UAgAAGCUGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 109943 0.67 0.97733
Target:  5'- uCCGgcGCGGCGCccuggCGGC-CGUGGCg -3'
miRNA:   3'- -GGU--CGCCGCGuagaaGCUGuGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 109730 0.68 0.965976
Target:  5'- cCCGG-GGCGCuggggCUgCGACugACGUGGCg -3'
miRNA:   3'- -GGUCgCCGCGua---GAaGCUG--UGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 109318 0.68 0.959005
Target:  5'- gCCGGCGGCGCuggaggCGGCGCc--GCg -3'
miRNA:   3'- -GGUCGCCGCGuagaa-GCUGUGcauUG- -5'
21697 3' -52.1 NC_004812.1 + 108956 0.7 0.915824
Target:  5'- -gAGCGGCGCAUCgccgcCGACguucGCGaGACc -3'
miRNA:   3'- ggUCGCCGCGUAGaa---GCUG----UGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 108396 0.72 0.844921
Target:  5'- -aGGCGGCGCucgAUCUcaacCGGCACGUcGGCg -3'
miRNA:   3'- ggUCGCCGCG---UAGAa---GCUGUGCA-UUG- -5'
21697 3' -52.1 NC_004812.1 + 108245 0.68 0.959005
Target:  5'- cCCGGCGGCgGCGUCcgCGGCGg--AGCc -3'
miRNA:   3'- -GGUCGCCG-CGUAGaaGCUGUgcaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.