miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 69445 0.71 0.868573
Target:  5'- gCAcGCGGCGCAUCcucugUCG-CGCGgccgAGCa -3'
miRNA:   3'- gGU-CGCCGCGUAGa----AGCuGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 97132 0.72 0.819466
Target:  5'- gCGGCGGCGCGccUCUccgCGGuCGCGUGGu -3'
miRNA:   3'- gGUCGCCGCGU--AGAa--GCU-GUGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 129418 0.72 0.8341
Target:  5'- gCGGCGGCGCGgcggCggggccgcgcggcggCGGCACGgcGCg -3'
miRNA:   3'- gGUCGCCGCGUa---Gaa-------------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 115416 0.72 0.836627
Target:  5'- cCCGcGCGGCGCGcCgacCGGCGCGgcGCc -3'
miRNA:   3'- -GGU-CGCCGCGUaGaa-GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 128685 0.72 0.844921
Target:  5'- gUCGGCgaccuGGCGCAUCcaggcggCGGCGCGgcGCa -3'
miRNA:   3'- -GGUCG-----CCGCGUAGaa-----GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 90610 0.71 0.853015
Target:  5'- cCCGGCGGCGaUGUCgggcgUCGugAUGUGc- -3'
miRNA:   3'- -GGUCGCCGC-GUAGa----AGCugUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 118086 0.71 0.853015
Target:  5'- cCCGGCcgccGCGCGUCUcCGGCGCGa--- -3'
miRNA:   3'- -GGUCGc---CGCGUAGAaGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 156054 0.71 0.860902
Target:  5'- aCgGGCGG-GCGUCgcgCGGCGCGUcGCc -3'
miRNA:   3'- -GgUCGCCgCGUAGaa-GCUGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 15003 0.71 0.860902
Target:  5'- gCCAGCugcaGGcCGCgGUCUUCGGCGCGcuGCu -3'
miRNA:   3'- -GGUCG----CC-GCG-UAGAAGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 128022 0.72 0.810616
Target:  5'- gUCGGCGGCGCGgccgUCGAgCGCGggcAGCa -3'
miRNA:   3'- -GGUCGCCGCGUaga-AGCU-GUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 130365 0.73 0.790566
Target:  5'- gCGGCGGCGCGgccgugaagCGGCcCGUGGCg -3'
miRNA:   3'- gGUCGCCGCGUagaa-----GCUGuGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 43484 0.73 0.783092
Target:  5'- cCCAggucGCGGCGCGUC-UCGguGCGCGUcAGCc -3'
miRNA:   3'- -GGU----CGCCGCGUAGaAGC--UGUGCA-UUG- -5'
21697 3' -52.1 NC_004812.1 + 71062 0.77 0.559131
Target:  5'- cCCuGCGGCGguUCgggCGGCGCGggGCg -3'
miRNA:   3'- -GGuCGCCGCguAGaa-GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 30399 0.77 0.579704
Target:  5'- uCCGGgGGCGCGgcggcCUUCaGGCACGUGAa -3'
miRNA:   3'- -GGUCgCCGCGUa----GAAG-CUGUGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 107623 0.76 0.631688
Target:  5'- gCCAgGCGGCGCAUUUU-GGCGCGgugGGCc -3'
miRNA:   3'- -GGU-CGCCGCGUAGAAgCUGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 106526 0.76 0.652539
Target:  5'- gCCGGCGGcCGCGgcgcCUUCGuCACGUAc- -3'
miRNA:   3'- -GGUCGCC-GCGUa---GAAGCuGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 19884 0.74 0.714397
Target:  5'- uCCAGCGGCGCGg---CGGCGgGgGACg -3'
miRNA:   3'- -GGUCGCCGCGUagaaGCUGUgCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 111558 0.74 0.724507
Target:  5'- aCCAGCGGCGCugcAUgUUCGGCGUGgugAGCc -3'
miRNA:   3'- -GGUCGCCGCG---UAgAAGCUGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 70541 0.73 0.764025
Target:  5'- gCCAGCGcGCuGCGaccggugCUUCG-CACGUAGCg -3'
miRNA:   3'- -GGUCGC-CG-CGUa------GAAGCuGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 32495 0.73 0.773624
Target:  5'- gUCGGCGGCGUaccgcguuGUCggCGGCACG-AGCu -3'
miRNA:   3'- -GGUCGCCGCG--------UAGaaGCUGUGCaUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.