miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 15003 0.71 0.860902
Target:  5'- gCCAGCugcaGGcCGCgGUCUUCGGCGCGcuGCu -3'
miRNA:   3'- -GGUCG----CC-GCG-UAGAAGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 69445 0.71 0.868573
Target:  5'- gCAcGCGGCGCAUCcucugUCG-CGCGgccgAGCa -3'
miRNA:   3'- gGU-CGCCGCGUAGa----AGCuGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 140654 0.7 0.912236
Target:  5'- gCGGCGGCGCcaacgcgccgccuacGUCU---ACGCGUGACc -3'
miRNA:   3'- gGUCGCCGCG---------------UAGAagcUGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 108956 0.7 0.915824
Target:  5'- -gAGCGGCGCAUCgccgcCGACguucGCGaGACc -3'
miRNA:   3'- ggUCGCCGCGUAGaa---GCUG----UGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 72238 0.7 0.915824
Target:  5'- gCGGCGGgGCGUCcggUCGGCgggcGCGaGACu -3'
miRNA:   3'- gGUCGCCgCGUAGa--AGCUG----UGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 98716 0.7 0.915824
Target:  5'- gCGGCGGCGCGgggUCGuucucGCGCGggGGCa -3'
miRNA:   3'- gGUCGCCGCGUagaAGC-----UGUGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 44925 0.7 0.921607
Target:  5'- gCCAGCGGCcaCGUCgcCGACgACGgggAGCg -3'
miRNA:   3'- -GGUCGCCGc-GUAGaaGCUG-UGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 117485 0.7 0.921607
Target:  5'- cCCGGCcgccgGGCGCGUC--CGACGCGg--- -3'
miRNA:   3'- -GGUCG-----CCGCGUAGaaGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 102825 0.7 0.921607
Target:  5'- uCCAG-GGCuucggacgGCGUCaUCGACACGUcGCc -3'
miRNA:   3'- -GGUCgCCG--------CGUAGaAGCUGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 90816 0.69 0.927142
Target:  5'- cCUGGCGGCGUcgUgga-GCACGUGGCg -3'
miRNA:   3'- -GGUCGCCGCGuaGaagcUGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 94388 0.7 0.909794
Target:  5'- gCGGCGGCGUAcgCggCGGCG-GUGGCg -3'
miRNA:   3'- gGUCGCCGCGUa-GaaGCUGUgCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 75986 0.7 0.909794
Target:  5'- -aGGCGGCGCAgc-UCGACgGCGUcgAACu -3'
miRNA:   3'- ggUCGCCGCGUagaAGCUG-UGCA--UUG- -5'
21697 3' -52.1 NC_004812.1 + 65378 0.71 0.868573
Target:  5'- aCGGUGGCGCGga-UCGACGCGcuccGCg -3'
miRNA:   3'- gGUCGCCGCGUagaAGCUGUGCau--UG- -5'
21697 3' -52.1 NC_004812.1 + 127694 0.71 0.876024
Target:  5'- gCGGCGGCGuCGUCgucgUCGGCgagcaGCGUGu- -3'
miRNA:   3'- gGUCGCCGC-GUAGa---AGCUG-----UGCAUug -5'
21697 3' -52.1 NC_004812.1 + 128153 0.71 0.883249
Target:  5'- gCGGCGGCGCGUCcggguagaGGCGCGcgcaGGCg -3'
miRNA:   3'- gGUCGCCGCGUAGaag-----CUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 93121 0.7 0.897
Target:  5'- uCgGGCGGCgGCGUCUgCGugACGUucgucGCg -3'
miRNA:   3'- -GgUCGCCG-CGUAGAaGCugUGCAu----UG- -5'
21697 3' -52.1 NC_004812.1 + 129913 0.7 0.902234
Target:  5'- gCCGGCGGCcaugGCGUagcccaggugCGGCACGgcGCg -3'
miRNA:   3'- -GGUCGCCG----CGUAgaa-------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 5840 0.7 0.903518
Target:  5'- gCCGGCGGCGCGcUCgggaGGCGgGgggAACa -3'
miRNA:   3'- -GGUCGCCGCGU-AGaag-CUGUgCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 67981 0.7 0.903518
Target:  5'- gCCGGCGGCGCA-CUggGGCGCc---- -3'
miRNA:   3'- -GGUCGCCGCGUaGAagCUGUGcauug -5'
21697 3' -52.1 NC_004812.1 + 128799 0.7 0.903518
Target:  5'- gCCAGCGcGCGCGggUCgaaggCGAgCGCGgcGCg -3'
miRNA:   3'- -GGUCGC-CGCGU--AGaa---GCU-GUGCauUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.