Results 81 - 100 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21697 | 3' | -52.1 | NC_004812.1 | + | 62674 | 0.69 | 0.937468 |
Target: 5'- -gGGaCGGCGCGUCgcCGuGCACGUGuACg -3' miRNA: 3'- ggUC-GCCGCGUAGaaGC-UGUGCAU-UG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 39704 | 0.69 | 0.937468 |
Target: 5'- cCCAGCaGCGCGUCgaaCuGCACGUcguACa -3' miRNA: 3'- -GGUCGcCGCGUAGaa-GcUGUGCAu--UG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 30351 | 0.69 | 0.94226 |
Target: 5'- gCCAGCGGCGUcgCgUCGAgcCGCucGGCg -3' miRNA: 3'- -GGUCGCCGCGuaGaAGCU--GUGcaUUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 64156 | 0.69 | 0.94226 |
Target: 5'- aCGGCGGCGCGgcgggCUcCG-CGCGggagGGCg -3' miRNA: 3'- gGUCGCCGCGUa----GAaGCuGUGCa---UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 9210 | 0.69 | 0.946807 |
Target: 5'- gCCGGUGGCGuCAcCUggCGAUACGaGGCc -3' miRNA: 3'- -GGUCGCCGC-GUaGAa-GCUGUGCaUUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 73839 | 0.69 | 0.946807 |
Target: 5'- cCCAGCGGCacccgacucgcGCGUCagcgUCGuCGCGgucagGGCg -3' miRNA: 3'- -GGUCGCCG-----------CGUAGa---AGCuGUGCa----UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 94699 | 0.69 | 0.946807 |
Target: 5'- gCGGCGGCGCGUg--CGGCcCG-AGCa -3' miRNA: 3'- gGUCGCCGCGUAgaaGCUGuGCaUUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 90816 | 0.69 | 0.927142 |
Target: 5'- cCUGGCGGCGUcgUgga-GCACGUGGCg -3' miRNA: 3'- -GGUCGCCGCGuaGaagcUGUGCAUUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 102825 | 0.7 | 0.921607 |
Target: 5'- uCCAG-GGCuucggacgGCGUCaUCGACACGUcGCc -3' miRNA: 3'- -GGUCgCCG--------CGUAGaAGCUGUGCAuUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 117485 | 0.7 | 0.921607 |
Target: 5'- cCCGGCcgccgGGCGCGUC--CGACGCGg--- -3' miRNA: 3'- -GGUCG-----CCGCGUAGaaGCUGUGCauug -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 67981 | 0.7 | 0.903518 |
Target: 5'- gCCGGCGGCGCA-CUggGGCGCc---- -3' miRNA: 3'- -GGUCGCCGCGUaGAagCUGUGcauug -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 128799 | 0.7 | 0.903518 |
Target: 5'- gCCAGCGcGCGCGggUCgaaggCGAgCGCGgcGCg -3' miRNA: 3'- -GGUCGC-CGCGU--AGaa---GCU-GUGCauUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 75986 | 0.7 | 0.909794 |
Target: 5'- -aGGCGGCGCAgc-UCGACgGCGUcgAACu -3' miRNA: 3'- ggUCGCCGCGUagaAGCUG-UGCA--UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 94388 | 0.7 | 0.909794 |
Target: 5'- gCGGCGGCGUAcgCggCGGCG-GUGGCg -3' miRNA: 3'- gGUCGCCGCGUa-GaaGCUGUgCAUUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 140654 | 0.7 | 0.912236 |
Target: 5'- gCGGCGGCGCcaacgcgccgccuacGUCU---ACGCGUGACc -3' miRNA: 3'- gGUCGCCGCG---------------UAGAagcUGUGCAUUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 108956 | 0.7 | 0.915824 |
Target: 5'- -gAGCGGCGCAUCgccgcCGACguucGCGaGACc -3' miRNA: 3'- ggUCGCCGCGUAGaa---GCUG----UGCaUUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 72238 | 0.7 | 0.915824 |
Target: 5'- gCGGCGGgGCGUCcggUCGGCgggcGCGaGACu -3' miRNA: 3'- gGUCGCCgCGUAGa--AGCUG----UGCaUUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 98716 | 0.7 | 0.915824 |
Target: 5'- gCGGCGGCGCGgggUCGuucucGCGCGggGGCa -3' miRNA: 3'- gGUCGCCGCGUagaAGC-----UGUGCa-UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 44925 | 0.7 | 0.921607 |
Target: 5'- gCCAGCGGCcaCGUCgcCGACgACGgggAGCg -3' miRNA: 3'- -GGUCGCCGc-GUAGaaGCUG-UGCa--UUG- -5' |
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21697 | 3' | -52.1 | NC_004812.1 | + | 143415 | 0.68 | 0.951111 |
Target: 5'- cCCGGC-GUGCAUCaUCGuCuGCGUAGCc -3' miRNA: 3'- -GGUCGcCGCGUAGaAGCuG-UGCAUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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