miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 89957 0.71 0.860902
Target:  5'- gCGGCGGCGCGcCUccCGACGCGc--- -3'
miRNA:   3'- gGUCGCCGCGUaGAa-GCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 108396 0.72 0.844921
Target:  5'- -aGGCGGCGCucgAUCUcaacCGGCACGUcGGCg -3'
miRNA:   3'- ggUCGCCGCG---UAGAa---GCUGUGCA-UUG- -5'
21697 3' -52.1 NC_004812.1 + 2514 0.72 0.810616
Target:  5'- gUCGGCGGCGCGgccgUCGAgCGCGggcAGCa -3'
miRNA:   3'- -GGUCGCCGCGUaga-AGCU-GUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 62356 0.75 0.683667
Target:  5'- gCCcGCGGCGCGUgggUCGGCGCG-AACc -3'
miRNA:   3'- -GGuCGCCGCGUAga-AGCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 3757 0.69 0.927142
Target:  5'- gCAGCGGCGCGg---CGGCGCcggcGACg -3'
miRNA:   3'- gGUCGCCGCGUagaaGCUGUGca--UUG- -5'
21697 3' -52.1 NC_004812.1 + 4405 0.7 0.902234
Target:  5'- gCCGGCGGCcaugGCGUagcccaggugCGGCACGgcGCg -3'
miRNA:   3'- -GGUCGCCG----CGUAgaa-------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 3176 0.72 0.844921
Target:  5'- gUCGGCgaccuGGCGCAUCcaggcggCGGCGCGgcGCa -3'
miRNA:   3'- -GGUCG-----CCGCGUAGaa-----GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 18541 0.75 0.673323
Target:  5'- -aGGCGGCGCAUgg-CGGCGCGUuGCc -3'
miRNA:   3'- ggUCGCCGCGUAgaaGCUGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 15981 0.7 0.897
Target:  5'- gCGGCGGCGCGUCUaCaGCACcgguGCa -3'
miRNA:   3'- gGUCGCCGCGUAGAaGcUGUGcau-UG- -5'
21697 3' -52.1 NC_004812.1 + 81637 0.79 0.469821
Target:  5'- aCGcGCGGCGCGUCUUCGAgGCGc--- -3'
miRNA:   3'- gGU-CGCCGCGUAGAAGCUgUGCauug -5'
21697 3' -52.1 NC_004812.1 + 100549 0.72 0.844921
Target:  5'- --cGCGGCGCGagCUcCGGCACGaGACg -3'
miRNA:   3'- gguCGCCGCGUa-GAaGCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 119237 0.71 0.868573
Target:  5'- gCGGgGGUGCG-CUUCGAcCGCGUGuACg -3'
miRNA:   3'- gGUCgCCGCGUaGAAGCU-GUGCAU-UG- -5'
21697 3' -52.1 NC_004812.1 + 3910 0.72 0.8341
Target:  5'- gCGGCGGCGCGgcggCggggccgcgcggcggCGGCACGgcGCg -3'
miRNA:   3'- gGUCGCCGCGUa---Gaa-------------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 45196 0.72 0.810616
Target:  5'- cCCGGCGGCGCGgc--CGGCAgCGaGACg -3'
miRNA:   3'- -GGUCGCCGCGUagaaGCUGU-GCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 115255 0.74 0.734535
Target:  5'- cCCGGUGGUGCGUggUUGAgGCGUAGg -3'
miRNA:   3'- -GGUCGCCGCGUAgaAGCUgUGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 41162 0.75 0.690882
Target:  5'- cCCAGCGGCGCGccgccaggcgcUCUcggcgccgcgccggUCGGCGCGccGCg -3'
miRNA:   3'- -GGUCGCCGCGU-----------AGA--------------AGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 48060 0.69 0.94226
Target:  5'- aCCAGCGaGCGCAgcgacUCgccgGGCGCGUAc- -3'
miRNA:   3'- -GGUCGC-CGCGU-----AGaag-CUGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 154971 0.69 0.927142
Target:  5'- -gAGCGGCGCGUCaUCGAUcCGc--- -3'
miRNA:   3'- ggUCGCCGCGUAGaAGCUGuGCauug -5'
21697 3' -52.1 NC_004812.1 + 44211 0.7 0.915824
Target:  5'- gCGGCGGCGCGgacgggCGaACGCGUGu- -3'
miRNA:   3'- gGUCGCCGCGUagaa--GC-UGUGCAUug -5'
21697 3' -52.1 NC_004812.1 + 3291 0.7 0.903518
Target:  5'- gCCAGCGcGCGCGggUCgaaggCGAgCGCGgcGCg -3'
miRNA:   3'- -GGUCGC-CGCGU--AGaa---GCU-GUGCauUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.