miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 154971 0.69 0.927142
Target:  5'- -gAGCGGCGCGUCaUCGAUcCGc--- -3'
miRNA:   3'- ggUCGCCGCGUAGaAGCUGuGCauug -5'
21697 3' -52.1 NC_004812.1 + 100646 0.68 0.95027
Target:  5'- cCUGGCGGCGCuggacauggUCGACGCGc--- -3'
miRNA:   3'- -GGUCGCCGCGuaga-----AGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 94267 0.75 0.704214
Target:  5'- uCCGGCGGgGCGUCcucgUCGAgCGCGcggGGCg -3'
miRNA:   3'- -GGUCGCCgCGUAGa---AGCU-GUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 4857 0.73 0.790566
Target:  5'- gCGGCGGCGCGgccgugaagCGGCcCGUGGCg -3'
miRNA:   3'- gGUCGCCGCGUagaa-----GCUGuGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 103370 0.72 0.819466
Target:  5'- uCCAGCGGCaCGUCaaCGACAUGcuggGGCg -3'
miRNA:   3'- -GGUCGCCGcGUAGaaGCUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 134240 0.72 0.836627
Target:  5'- gCUGGCGGCGCG-CUUUGcCGCGUcaGGCc -3'
miRNA:   3'- -GGUCGCCGCGUaGAAGCuGUGCA--UUG- -5'
21697 3' -52.1 NC_004812.1 + 148987 0.71 0.853015
Target:  5'- cCCGGCcgccGCGCGUCUcCGGCGCGa--- -3'
miRNA:   3'- -GGUCGc---CGCGUAGAaGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 119237 0.71 0.868573
Target:  5'- gCGGgGGUGCG-CUUCGAcCGCGUGuACg -3'
miRNA:   3'- gGUCgCCGCGUaGAAGCU-GUGCAU-UG- -5'
21697 3' -52.1 NC_004812.1 + 4405 0.7 0.902234
Target:  5'- gCCGGCGGCcaugGCGUagcccaggugCGGCACGgcGCg -3'
miRNA:   3'- -GGUCGCCG----CGUAgaa-------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 21627 0.7 0.909794
Target:  5'- cCCGGCGGCGC-UCggcCGAgCugGUGu- -3'
miRNA:   3'- -GGUCGCCGCGuAGaa-GCU-GugCAUug -5'
21697 3' -52.1 NC_004812.1 + 25072 0.67 0.979669
Target:  5'- gCGGCGGCGgGcUCcUCGACgggGCGgcGCc -3'
miRNA:   3'- gGUCGCCGCgU-AGaAGCUG---UGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 116473 0.67 0.97733
Target:  5'- gCGGCGGCGgAUagCUUCGcCGCGg--- -3'
miRNA:   3'- gGUCGCCGCgUA--GAAGCuGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 56681 0.68 0.955176
Target:  5'- gCGGCGucgacGCGCAUCUUCGGCGg----- -3'
miRNA:   3'- gGUCGC-----CGCGUAGAAGCUGUgcauug -5'
21697 3' -52.1 NC_004812.1 + 76129 0.68 0.959005
Target:  5'- cCCAcuuCGGCGCGUCUgugguccgUGugGCGUcGCg -3'
miRNA:   3'- -GGUc--GCCGCGUAGAa-------GCugUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 131761 0.68 0.962604
Target:  5'- gCAGCcGCGCcgCccgCGGCGCGUGccGCg -3'
miRNA:   3'- gGUCGcCGCGuaGaa-GCUGUGCAU--UG- -5'
21697 3' -52.1 NC_004812.1 + 102829 0.68 0.965976
Target:  5'- -gGGCGGCGCGcCUccacgccggCGACGCGcAACc -3'
miRNA:   3'- ggUCGCCGCGUaGAa--------GCUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 48591 0.67 0.968823
Target:  5'- aCCGGCGGCGacgcggccgcggcCAUCcggaCGACGCGcguGCg -3'
miRNA:   3'- -GGUCGCCGC-------------GUAGaa--GCUGUGCau-UG- -5'
21697 3' -52.1 NC_004812.1 + 144781 0.67 0.969129
Target:  5'- gCCAGCGGCuggaGCGUUgguggGACACG-AACc -3'
miRNA:   3'- -GGUCGCCG----CGUAGaag--CUGUGCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 29601 0.67 0.969129
Target:  5'- gCGGCGGCGCGggc-CGGC-CGgcGCu -3'
miRNA:   3'- gGUCGCCGCGUagaaGCUGuGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 58763 0.67 0.972067
Target:  5'- gCCGGCGGCGCccggCgagCGaggGCGCGgugGGCu -3'
miRNA:   3'- -GGUCGCCGCGua--Gaa-GC---UGUGCa--UUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.