miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 138390 0.68 0.959005
Target:  5'- uCgAGCGGCGCc---UCGACGCGgaguACu -3'
miRNA:   3'- -GgUCGCCGCGuagaAGCUGUGCau--UG- -5'
21697 3' -52.1 NC_004812.1 + 151924 0.68 0.962604
Target:  5'- gCCGGgGGCGC-UCcccUCGGCGcCGgcGCg -3'
miRNA:   3'- -GGUCgCCGCGuAGa--AGCUGU-GCauUG- -5'
21697 3' -52.1 NC_004812.1 + 107581 0.68 0.965649
Target:  5'- gCGGCGGCGCGg--UUGACcucguccGCGUGGg -3'
miRNA:   3'- gGUCGCCGCGUagaAGCUG-------UGCAUUg -5'
21697 3' -52.1 NC_004812.1 + 114518 0.68 0.965976
Target:  5'- uCCGG-GGCGCGUCgggUCGGCG---GACg -3'
miRNA:   3'- -GGUCgCCGCGUAGa--AGCUGUgcaUUG- -5'
21697 3' -52.1 NC_004812.1 + 7254 0.67 0.968823
Target:  5'- aCCGGCGGCGUcccccGUCgccuagcaaCGACggaucaccccguuGCGUAACu -3'
miRNA:   3'- -GGUCGCCGCG-----UAGaa-------GCUG-------------UGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 29601 0.67 0.969129
Target:  5'- gCGGCGGCGCGggc-CGGC-CGgcGCu -3'
miRNA:   3'- gGUCGCCGCGUagaaGCUGuGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 58763 0.67 0.972067
Target:  5'- gCCGGCGGCGCccggCgagCGaggGCGCGgugGGCu -3'
miRNA:   3'- -GGUCGCCGCGua--Gaa-GC---UGUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 21627 0.7 0.909794
Target:  5'- cCCGGCGGCGC-UCggcCGAgCugGUGu- -3'
miRNA:   3'- -GGUCGCCGCGuAGaa-GCU-GugCAUug -5'
21697 3' -52.1 NC_004812.1 + 4405 0.7 0.902234
Target:  5'- gCCGGCGGCcaugGCGUagcccaggugCGGCACGgcGCg -3'
miRNA:   3'- -GGUCGCCG----CGUAgaa-------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 119237 0.71 0.868573
Target:  5'- gCGGgGGUGCG-CUUCGAcCGCGUGuACg -3'
miRNA:   3'- gGUCgCCGCGUaGAAGCU-GUGCAU-UG- -5'
21697 3' -52.1 NC_004812.1 + 69652 0.66 0.981824
Target:  5'- cUCGGCGGCGaagGUCUgcgguUUGGCGCGccGCu -3'
miRNA:   3'- -GGUCGCCGCg--UAGA-----AGCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 107631 0.66 0.983803
Target:  5'- gUCuGCGGcCGCGUCgcggGGCACGUcGCc -3'
miRNA:   3'- -GGuCGCC-GCGUAGaag-CUGUGCAuUG- -5'
21697 3' -52.1 NC_004812.1 + 22271 0.66 0.985614
Target:  5'- cCCGGgGcGCGCGUCuUUCGGagcgaGgGUGACc -3'
miRNA:   3'- -GGUCgC-CGCGUAG-AAGCUg----UgCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 67736 0.66 0.987108
Target:  5'- gCAGCguguuggGGCGCAgcgUCUcgccgUCG-CGCGUGACc -3'
miRNA:   3'- gGUCG-------CCGCGU---AGA-----AGCuGUGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 152755 0.66 0.987266
Target:  5'- gCGGCGGcCGCGg---CGAcCACGgcGCa -3'
miRNA:   3'- gGUCGCC-GCGUagaaGCU-GUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 94267 0.75 0.704214
Target:  5'- uCCGGCGGgGCGUCcucgUCGAgCGCGcggGGCg -3'
miRNA:   3'- -GGUCGCCgCGUAGa---AGCU-GUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 4857 0.73 0.790566
Target:  5'- gCGGCGGCGCGgccgugaagCGGCcCGUGGCg -3'
miRNA:   3'- gGUCGCCGCGUagaa-----GCUGuGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 103370 0.72 0.819466
Target:  5'- uCCAGCGGCaCGUCaaCGACAUGcuggGGCg -3'
miRNA:   3'- -GGUCGCCGcGUAGaaGCUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 134240 0.72 0.836627
Target:  5'- gCUGGCGGCGCG-CUUUGcCGCGUcaGGCc -3'
miRNA:   3'- -GGUCGCCGCGUaGAAGCuGUGCA--UUG- -5'
21697 3' -52.1 NC_004812.1 + 148987 0.71 0.853015
Target:  5'- cCCGGCcgccGCGCGUCUcCGGCGCGa--- -3'
miRNA:   3'- -GGUCGc---CGCGUAGAaGCUGUGCauug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.