miRNA display CGI


Results 101 - 120 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 3' -52.1 NC_004812.1 + 151924 0.68 0.962604
Target:  5'- gCCGGgGGCGC-UCcccUCGGCGcCGgcGCg -3'
miRNA:   3'- -GGUCgCCGCGuAGa--AGCUGU-GCauUG- -5'
21697 3' -52.1 NC_004812.1 + 28403 0.66 0.987266
Target:  5'- uCCGGCcgcgucuucgGGCccgGCGUCUUCGcGCGCGUcgaGGCc -3'
miRNA:   3'- -GGUCG----------CCG---CGUAGAAGC-UGUGCA---UUG- -5'
21697 3' -52.1 NC_004812.1 + 94267 0.75 0.704214
Target:  5'- uCCGGCGGgGCGUCcucgUCGAgCGCGcggGGCg -3'
miRNA:   3'- -GGUCGCCgCGUAGa---AGCU-GUGCa--UUG- -5'
21697 3' -52.1 NC_004812.1 + 4857 0.73 0.790566
Target:  5'- gCGGCGGCGCGgccgugaagCGGCcCGUGGCg -3'
miRNA:   3'- gGUCGCCGCGUagaa-----GCUGuGCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 103370 0.72 0.819466
Target:  5'- uCCAGCGGCaCGUCaaCGACAUGcuggGGCg -3'
miRNA:   3'- -GGUCGCCGcGUAGaaGCUGUGCa---UUG- -5'
21697 3' -52.1 NC_004812.1 + 134240 0.72 0.836627
Target:  5'- gCUGGCGGCGCG-CUUUGcCGCGUcaGGCc -3'
miRNA:   3'- -GGUCGCCGCGUaGAAGCuGUGCA--UUG- -5'
21697 3' -52.1 NC_004812.1 + 148987 0.71 0.853015
Target:  5'- cCCGGCcgccGCGCGUCUcCGGCGCGa--- -3'
miRNA:   3'- -GGUCGc---CGCGUAGAaGCUGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 119237 0.71 0.868573
Target:  5'- gCGGgGGUGCG-CUUCGAcCGCGUGuACg -3'
miRNA:   3'- gGUCgCCGCGUaGAAGCU-GUGCAU-UG- -5'
21697 3' -52.1 NC_004812.1 + 4405 0.7 0.902234
Target:  5'- gCCGGCGGCcaugGCGUagcccaggugCGGCACGgcGCg -3'
miRNA:   3'- -GGUCGCCG----CGUAgaa-------GCUGUGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 21627 0.7 0.909794
Target:  5'- cCCGGCGGCGC-UCggcCGAgCugGUGu- -3'
miRNA:   3'- -GGUCGCCGCGuAGaa-GCU-GugCAUug -5'
21697 3' -52.1 NC_004812.1 + 54609 0.69 0.932429
Target:  5'- gCGGCGGCGCcgCgagUCG-CGCGa--- -3'
miRNA:   3'- gGUCGCCGCGuaGa--AGCuGUGCauug -5'
21697 3' -52.1 NC_004812.1 + 92642 0.69 0.94226
Target:  5'- gCCGGCgaGGCGCAgca--GGCACGUGuACa -3'
miRNA:   3'- -GGUCG--CCGCGUagaagCUGUGCAU-UG- -5'
21697 3' -52.1 NC_004812.1 + 128169 0.68 0.951111
Target:  5'- --cGCGGCGCugcgUCGGCGCcUGGCg -3'
miRNA:   3'- gguCGCCGCGuagaAGCUGUGcAUUG- -5'
21697 3' -52.1 NC_004812.1 + 138390 0.68 0.959005
Target:  5'- uCgAGCGGCGCc---UCGACGCGgaguACu -3'
miRNA:   3'- -GgUCGCCGCGuagaAGCUGUGCau--UG- -5'
21697 3' -52.1 NC_004812.1 + 54744 0.68 0.962604
Target:  5'- gCCGGCgcggGGcCGCAUCcccgCGGCGCGcgGGCg -3'
miRNA:   3'- -GGUCG----CC-GCGUAGaa--GCUGUGCa-UUG- -5'
21697 3' -52.1 NC_004812.1 + 7925 0.66 0.990129
Target:  5'- gCuGCGGCGCG-CgcCGGCGCGgccggggGGCg -3'
miRNA:   3'- gGuCGCCGCGUaGaaGCUGUGCa------UUG- -5'
21697 3' -52.1 NC_004812.1 + 126971 0.68 0.965649
Target:  5'- aCGGCGGCgacgccgGCGUCcUCGGCGgGcGGCg -3'
miRNA:   3'- gGUCGCCG-------CGUAGaAGCUGUgCaUUG- -5'
21697 3' -52.1 NC_004812.1 + 15443 0.68 0.965976
Target:  5'- -gAGCuGGCGCGcgcCUUCGACuCGgcGCg -3'
miRNA:   3'- ggUCG-CCGCGUa--GAAGCUGuGCauUG- -5'
21697 3' -52.1 NC_004812.1 + 94388 0.7 0.909794
Target:  5'- gCGGCGGCGUAcgCggCGGCG-GUGGCg -3'
miRNA:   3'- gGUCGCCGCGUa-GaaGCUGUgCAUUG- -5'
21697 3' -52.1 NC_004812.1 + 71932 0.68 0.962604
Target:  5'- gCAGCGGCGagga--CGGCGCGggGCg -3'
miRNA:   3'- gGUCGCCGCguagaaGCUGUGCauUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.