miRNA display CGI


Results 1 - 20 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21697 5' -52.9 NC_004812.1 + 108844 0.65 0.983547
Target:  5'- cGGGCCGCGagacgggaacGCAGAagaGCGc--CGCg -3'
miRNA:   3'- -CCCGGCGCaua-------CGUCUa--CGCuuuGCG- -5'
21697 5' -52.9 NC_004812.1 + 46152 0.65 0.983162
Target:  5'- uGGGCCGCaGgcgcucggccaGCAGGUcgagcguccacGCGAAcACGCg -3'
miRNA:   3'- -CCCGGCG-Caua--------CGUCUA-----------CGCUU-UGCG- -5'
21697 5' -52.9 NC_004812.1 + 23497 0.66 0.982771
Target:  5'- gGGGCUGCuGUcgcacuacGUGCGGGUGCuGcuggggccccacgucGGCGCc -3'
miRNA:   3'- -CCCGGCG-CA--------UACGUCUACGcU---------------UUGCG- -5'
21697 5' -52.9 NC_004812.1 + 12379 0.66 0.981967
Target:  5'- cGGCCGCGcg-GCcgGGAggGCGAAGaGCc -3'
miRNA:   3'- cCCGGCGCauaCG--UCUa-CGCUUUgCG- -5'
21697 5' -52.9 NC_004812.1 + 26718 0.66 0.981967
Target:  5'- cGGCCGCuUcgGCuGggGCcuGGCGCa -3'
miRNA:   3'- cCCGGCGcAuaCGuCuaCGcuUUGCG- -5'
21697 5' -52.9 NC_004812.1 + 102942 0.66 0.981967
Target:  5'- -aGCCGCGgggGUGGcgGgGggGCGUc -3'
miRNA:   3'- ccCGGCGCauaCGUCuaCgCuuUGCG- -5'
21697 5' -52.9 NC_004812.1 + 114699 0.66 0.981967
Target:  5'- gGGGCCGCGggggaGUAcguGAUGCacGGCGUc -3'
miRNA:   3'- -CCCGGCGCaua--CGU---CUACGcuUUGCG- -5'
21697 5' -52.9 NC_004812.1 + 146413 0.66 0.981967
Target:  5'- cGGCCagcuccGCGUcgggGCAGcaguUGCGAAcCGCg -3'
miRNA:   3'- cCCGG------CGCAua--CGUCu---ACGCUUuGCG- -5'
21697 5' -52.9 NC_004812.1 + 128708 0.66 0.981967
Target:  5'- cGGCgGCGcggcGCAGcgGgccCGAGGCGCg -3'
miRNA:   3'- cCCGgCGCaua-CGUCuaC---GCUUUGCG- -5'
21697 5' -52.9 NC_004812.1 + 84034 0.66 0.981967
Target:  5'- gGGGCgGCGU-UGguGucgGCGAuaccAugGCc -3'
miRNA:   3'- -CCCGgCGCAuACguCua-CGCU----UugCG- -5'
21697 5' -52.9 NC_004812.1 + 62283 0.66 0.981967
Target:  5'- aGGCCGCGccgcacaccUAcUGCAGcgaGUGCGAugaguuuCGCu -3'
miRNA:   3'- cCCGGCGC---------AU-ACGUC---UACGCUuu-----GCG- -5'
21697 5' -52.9 NC_004812.1 + 99396 0.66 0.981967
Target:  5'- cGGcGCUGCGgcgGCugGGGUcGuCGggGCGCa -3'
miRNA:   3'- -CC-CGGCGCauaCG--UCUA-C-GCuuUGCG- -5'
21697 5' -52.9 NC_004812.1 + 47039 0.66 0.981967
Target:  5'- cGGGCaGCGggguuugcGUGCGGGcguccUGCGucAGCGCc -3'
miRNA:   3'- -CCCGgCGCa-------UACGUCU-----ACGCu-UUGCG- -5'
21697 5' -52.9 NC_004812.1 + 152226 0.66 0.981967
Target:  5'- cGGCCGCuUcgGCuGggGCcuGGCGCa -3'
miRNA:   3'- cCCGGCGcAuaCGuCuaCGcuUUGCG- -5'
21697 5' -52.9 NC_004812.1 + 3199 0.66 0.981967
Target:  5'- cGGCgGCGcggcGCAGcgGgccCGAGGCGCg -3'
miRNA:   3'- cCCGgCGCaua-CGUCuaC---GCUUUGCG- -5'
21697 5' -52.9 NC_004812.1 + 15326 0.66 0.981967
Target:  5'- aGGCCGCGcgagGgGGAaGUGAcgcAGCGCc -3'
miRNA:   3'- cCCGGCGCaua-CgUCUaCGCU---UUGCG- -5'
21697 5' -52.9 NC_004812.1 + 40840 0.66 0.981967
Target:  5'- cGGCgGCGUuUGCgAGA-GCGAGugccCGCc -3'
miRNA:   3'- cCCGgCGCAuACG-UCUaCGCUUu---GCG- -5'
21697 5' -52.9 NC_004812.1 + 46590 0.66 0.981967
Target:  5'- cGGCCGgGUAgcaCAGGaGCG--GCGCg -3'
miRNA:   3'- cCCGGCgCAUac-GUCUaCGCuuUGCG- -5'
21697 5' -52.9 NC_004812.1 + 80837 0.66 0.981967
Target:  5'- gGGGcCCGCGUucgGCGccGccGCcGAGACGUa -3'
miRNA:   3'- -CCC-GGCGCAua-CGU--CuaCG-CUUUGCG- -5'
21697 5' -52.9 NC_004812.1 + 94538 0.66 0.981967
Target:  5'- gGGGCCGCcgcccuGUcgGCGGcccuggugGCGggGCu- -3'
miRNA:   3'- -CCCGGCG------CAuaCGUCua------CGCuuUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.