miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21698 3' -55.1 NC_004812.1 + 153537 0.66 0.957186
Target:  5'- gCCUGGACCgacgCGcGCGGCGGCcUCu -3'
miRNA:   3'- -GGACCUGGacagGC-UGUCGCUGaAGc -5'
21698 3' -55.1 NC_004812.1 + 28028 0.66 0.957186
Target:  5'- gCCUGGACCgacgCGcGCGGCGGCcUCu -3'
miRNA:   3'- -GGACCUGGacagGC-UGUCGCUGaAGc -5'
21698 3' -55.1 NC_004812.1 + 59148 0.66 0.957186
Target:  5'- uCCUGGuacACCgccagGUUCGAcCGGCGGCU-Ca -3'
miRNA:   3'- -GGACC---UGGa----CAGGCU-GUCGCUGAaGc -5'
21698 3' -55.1 NC_004812.1 + 104291 0.66 0.95336
Target:  5'- --cGGGCCgucgCCGGCGgGCGACggCGg -3'
miRNA:   3'- ggaCCUGGaca-GGCUGU-CGCUGaaGC- -5'
21698 3' -55.1 NC_004812.1 + 140295 0.66 0.95336
Target:  5'- aCUGGugCUGgaagCUGuuGGCGACguacgugUCGu -3'
miRNA:   3'- gGACCugGACa---GGCugUCGCUGa------AGC- -5'
21698 3' -55.1 NC_004812.1 + 64696 0.66 0.95336
Target:  5'- cCCUGGACCgc-CUGGaGGCcGACUUCc -3'
miRNA:   3'- -GGACCUGGacaGGCUgUCG-CUGAAGc -5'
21698 3' -55.1 NC_004812.1 + 18797 0.66 0.949311
Target:  5'- gCCaggGGGCCUGcUCCG-CGGCGcCcUCGc -3'
miRNA:   3'- -GGa--CCUGGAC-AGGCuGUCGCuGaAGC- -5'
21698 3' -55.1 NC_004812.1 + 109092 0.66 0.949311
Target:  5'- cCCUGGAgCgugCgGACGGUGGCggCGa -3'
miRNA:   3'- -GGACCUgGacaGgCUGUCGCUGaaGC- -5'
21698 3' -55.1 NC_004812.1 + 82428 0.66 0.949311
Target:  5'- aCCUGGACCUGcCCuuC-GCGACc--- -3'
miRNA:   3'- -GGACCUGGACaGGcuGuCGCUGaagc -5'
21698 3' -55.1 NC_004812.1 + 153082 0.66 0.949311
Target:  5'- gCCUGGGCCUggGUCUgGugGGCgGGCUg-- -3'
miRNA:   3'- -GGACCUGGA--CAGG-CugUCG-CUGAagc -5'
21698 3' -55.1 NC_004812.1 + 77438 0.66 0.949311
Target:  5'- gCCUcgaaGACCUGUCCGcCGGcCGACa--- -3'
miRNA:   3'- -GGAc---CUGGACAGGCuGUC-GCUGaagc -5'
21698 3' -55.1 NC_004812.1 + 103025 0.66 0.949311
Target:  5'- gUUGGuCCUcUCaCGACGGCGGCUguacgCGu -3'
miRNA:   3'- gGACCuGGAcAG-GCUGUCGCUGAa----GC- -5'
21698 3' -55.1 NC_004812.1 + 44812 0.66 0.949311
Target:  5'- uCCgcggGGGCgCUGUCCcgcaucGACAGUGACa--- -3'
miRNA:   3'- -GGa---CCUG-GACAGG------CUGUCGCUGaagc -5'
21698 3' -55.1 NC_004812.1 + 122181 0.66 0.949311
Target:  5'- gCCUGGGCCUggGUCUgGugGGCgGGCUg-- -3'
miRNA:   3'- -GGACCUGGA--CAGG-CugUCG-CUGAagc -5'
21698 3' -55.1 NC_004812.1 + 39282 0.66 0.945035
Target:  5'- gCCgGGGCCcgggGUCCGGgGGCG-CggCGg -3'
miRNA:   3'- -GGaCCUGGa---CAGGCUgUCGCuGaaGC- -5'
21698 3' -55.1 NC_004812.1 + 8381 0.66 0.945035
Target:  5'- gCCgGGGCCcgggGUCCGGgGGCG-CggCGg -3'
miRNA:   3'- -GGaCCUGGa---CAGGCUgUCGCuGaaGC- -5'
21698 3' -55.1 NC_004812.1 + 14737 0.66 0.942358
Target:  5'- aCUGGACCgagggcucccgcggcUGcUCCGGgGGCGACg--- -3'
miRNA:   3'- gGACCUGG---------------AC-AGGCUgUCGCUGaagc -5'
21698 3' -55.1 NC_004812.1 + 137553 0.66 0.940528
Target:  5'- gCCUGGGCCgcgGUCuCGGCcgccGCGGCc--- -3'
miRNA:   3'- -GGACCUGGa--CAG-GCUGu---CGCUGaagc -5'
21698 3' -55.1 NC_004812.1 + 53633 0.66 0.940528
Target:  5'- gCUGGAgCUGcCCGACGacacCGACUaCGa -3'
miRNA:   3'- gGACCUgGACaGGCUGUc---GCUGAaGC- -5'
21698 3' -55.1 NC_004812.1 + 109692 0.66 0.940528
Target:  5'- --cGGAUgUGUCCGccGCGGCGGCg--- -3'
miRNA:   3'- ggaCCUGgACAGGC--UGUCGCUGaagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.