miRNA display CGI


Results 1 - 20 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21698 5' -63.7 NC_004812.1 + 65475 0.66 0.620762
Target:  5'- --gGACcCCCCCGGg-CCGAgcgcgcgcggaccacGGGGGCg -3'
miRNA:   3'- cugCUGcGGGGGCCgaGGCU---------------CCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 109536 0.66 0.617873
Target:  5'- --aGGCGCCCCCGGCgaucgcggcgcugaCGcAGGAcGCc -3'
miRNA:   3'- cugCUGCGGGGGCCGag------------GC-UCCUcCG- -5'
21698 5' -63.7 NC_004812.1 + 114220 0.66 0.61691
Target:  5'- cACGAUGCCCacaaaacgCCGGCgCCGGucGGGCc -3'
miRNA:   3'- cUGCUGCGGG--------GGCCGaGGCUccUCCG- -5'
21698 5' -63.7 NC_004812.1 + 54666 0.66 0.61691
Target:  5'- cGCGGgGCCCagcggCCGGgUCgcggCGAGGAGGg -3'
miRNA:   3'- cUGCUgCGGG-----GGCCgAG----GCUCCUCCg -5'
21698 5' -63.7 NC_004812.1 + 122832 0.66 0.61691
Target:  5'- gGGCGAUGUCgUCGGCcgCCGAGcccguGAGGg -3'
miRNA:   3'- -CUGCUGCGGgGGCCGa-GGCUC-----CUCCg -5'
21698 5' -63.7 NC_004812.1 + 86969 0.66 0.61691
Target:  5'- aGGCGGaacCGCCCgCGGgUgCCGGagcggcGGGGGCa -3'
miRNA:   3'- -CUGCU---GCGGGgGCCgA-GGCU------CCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 90944 0.66 0.61691
Target:  5'- uGGCgGGCGCUCUCccgcggGGCUCCGguAGG-GGCu -3'
miRNA:   3'- -CUG-CUGCGGGGG------CCGAGGC--UCCuCCG- -5'
21698 5' -63.7 NC_004812.1 + 45198 0.66 0.61691
Target:  5'- cGGCGGCGCggCCGGCagCGAGacGGCg -3'
miRNA:   3'- -CUGCUGCGggGGCCGagGCUCcuCCG- -5'
21698 5' -63.7 NC_004812.1 + 13396 0.66 0.61691
Target:  5'- aGGCGcGCGCgCCCGGCgUCCu-GGuccuGGCu -3'
miRNA:   3'- -CUGC-UGCGgGGGCCG-AGGcuCCu---CCG- -5'
21698 5' -63.7 NC_004812.1 + 54446 0.66 0.61691
Target:  5'- cGCGG-GCCCCCGaCgacggggCCGAcgcGGAGGCc -3'
miRNA:   3'- cUGCUgCGGGGGCcGa------GGCU---CCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 151947 0.66 0.61691
Target:  5'- gGACGAgGCgCgCCGGCgcuaCGAGGccgccGGCg -3'
miRNA:   3'- -CUGCUgCGgG-GGCCGag--GCUCCu----CCG- -5'
21698 5' -63.7 NC_004812.1 + 153089 0.66 0.61691
Target:  5'- cGCGGCcccGCCCCCGGggCCGccGGccccGGGCc -3'
miRNA:   3'- cUGCUG---CGGGGGCCgaGGCu-CC----UCCG- -5'
21698 5' -63.7 NC_004812.1 + 105911 0.66 0.61691
Target:  5'- cGGCGGCGCggcucgccgaguCCCCGGCgaCGcacaGAGGCa -3'
miRNA:   3'- -CUGCUGCG------------GGGGCCGagGCuc--CUCCG- -5'
21698 5' -63.7 NC_004812.1 + 99214 0.66 0.61691
Target:  5'- uGACGcGCGCUCgCguggGGCagCGGGGAGGUg -3'
miRNA:   3'- -CUGC-UGCGGGgG----CCGagGCUCCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 27581 0.66 0.61691
Target:  5'- cGCGGCcccGCCCCCGGggCCGccGGccccGGGCc -3'
miRNA:   3'- cUGCUG---CGGGGGCCgaGGCu-CC----UCCG- -5'
21698 5' -63.7 NC_004812.1 + 65804 0.66 0.61691
Target:  5'- cACGACGCCgCCGaggCCGuGGAcuGGCu -3'
miRNA:   3'- cUGCUGCGGgGGCcgaGGCuCCU--CCG- -5'
21698 5' -63.7 NC_004812.1 + 106535 0.66 0.61691
Target:  5'- cGCGGCGCCUucgucacguacgCCGGggagCUgaggGAGGAGGCg -3'
miRNA:   3'- cUGCUGCGGG------------GGCCga--GG----CUCCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 18880 0.66 0.61691
Target:  5'- -uCGGCGgCCCgCGGgucgCCGcGGAGGCc -3'
miRNA:   3'- cuGCUGCgGGG-GCCga--GGCuCCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 26439 0.66 0.61691
Target:  5'- gGACGAgGCgCgCCGGCgcuaCGAGGccgccGGCg -3'
miRNA:   3'- -CUGCUgCGgG-GGCCGag--GCUCCu----CCG- -5'
21698 5' -63.7 NC_004812.1 + 28917 0.66 0.615947
Target:  5'- uGGCG-CGCCUCCGGUUcgcggaaugccgcCCGGGGAcGUc -3'
miRNA:   3'- -CUGCuGCGGGGGCCGA-------------GGCUCCUcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.