miRNA display CGI


Results 21 - 40 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21698 5' -63.7 NC_004812.1 + 72617 0.66 0.607289
Target:  5'- cGCGACGCCCCCcaaGGagggCCG-GGccGCg -3'
miRNA:   3'- cUGCUGCGGGGG---CCga--GGCuCCucCG- -5'
21698 5' -63.7 NC_004812.1 + 56121 0.66 0.607289
Target:  5'- uGCGguACGCCUgCGcGCUCCG-GGcGGCc -3'
miRNA:   3'- cUGC--UGCGGGgGC-CGAGGCuCCuCCG- -5'
21698 5' -63.7 NC_004812.1 + 82520 0.66 0.607289
Target:  5'- -cCGGgGCCCgCgaGGCcCCG-GGAGGCg -3'
miRNA:   3'- cuGCUgCGGG-Gg-CCGaGGCuCCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 79803 0.66 0.607289
Target:  5'- uGCG-CGCCgCCCuGCgcgCCGAccucuGGGGGCu -3'
miRNA:   3'- cUGCuGCGG-GGGcCGa--GGCU-----CCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 71052 0.66 0.607289
Target:  5'- gGGCGGcCGCCCCugCGGCggUUCGGGcggcgcGGGGCg -3'
miRNA:   3'- -CUGCU-GCGGGG--GCCG--AGGCUC------CUCCG- -5'
21698 5' -63.7 NC_004812.1 + 78922 0.66 0.607289
Target:  5'- gGACGACGCUguuguuggaCCGGCUggggUCGGGGGuGCg -3'
miRNA:   3'- -CUGCUGCGGg--------GGCCGA----GGCUCCUcCG- -5'
21698 5' -63.7 NC_004812.1 + 8611 0.66 0.607289
Target:  5'- aGGCcGCGCCuCCCGGUaauggaCgCGAGG-GGCg -3'
miRNA:   3'- -CUGcUGCGG-GGGCCGa-----G-GCUCCuCCG- -5'
21698 5' -63.7 NC_004812.1 + 23914 0.66 0.607289
Target:  5'- gGACGACGa-CUCGGaguacaCCGAGGGGGa -3'
miRNA:   3'- -CUGCUGCggGGGCCga----GGCUCCUCCg -5'
21698 5' -63.7 NC_004812.1 + 55950 0.66 0.607289
Target:  5'- -cCGACGCCgaggCCCGGC-CCGGcGcGGCu -3'
miRNA:   3'- cuGCUGCGG----GGGCCGaGGCUcCuCCG- -5'
21698 5' -63.7 NC_004812.1 + 137472 0.66 0.607289
Target:  5'- -uCGGCGCCgCCuGCUUCGcGcGGGGCu -3'
miRNA:   3'- cuGCUGCGGgGGcCGAGGCuC-CUCCG- -5'
21698 5' -63.7 NC_004812.1 + 43242 0.66 0.607289
Target:  5'- aGGCGGCGagcaCCCCCGGggUgaugguggCGAGG-GGCa -3'
miRNA:   3'- -CUGCUGC----GGGGGCCgaG--------GCUCCuCCG- -5'
21698 5' -63.7 NC_004812.1 + 39512 0.66 0.607289
Target:  5'- aGGCcGCGCCuCCCGGUaauggaCgCGAGG-GGCg -3'
miRNA:   3'- -CUGcUGCGG-GGGCCGa-----G-GCUCCuCCG- -5'
21698 5' -63.7 NC_004812.1 + 18437 0.66 0.607289
Target:  5'- cGGCGGgggcCGCgUCCGGUggcgcggCGGGGGGGCg -3'
miRNA:   3'- -CUGCU----GCGgGGGCCGag-----GCUCCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 126972 0.66 0.607289
Target:  5'- cGGCGGCGaCgCCGGCgUCCucGGcGGGCg -3'
miRNA:   3'- -CUGCUGCgGgGGCCG-AGGcuCC-UCCG- -5'
21698 5' -63.7 NC_004812.1 + 1464 0.66 0.607289
Target:  5'- cGGCGGCGaCgCCGGCgUCCucGGcGGGCg -3'
miRNA:   3'- -CUGCUGCgGgGGCCG-AGGcuCC-UCCG- -5'
21698 5' -63.7 NC_004812.1 + 76156 0.66 0.607289
Target:  5'- uGGCGucgcGCGCCCUCuugcgGGCggCUGGGGuGGGCg -3'
miRNA:   3'- -CUGC----UGCGGGGG-----CCGa-GGCUCC-UCCG- -5'
21698 5' -63.7 NC_004812.1 + 147238 0.66 0.607289
Target:  5'- gGGCGugGCCga-GGuCUUCGAGGAaaccGGCg -3'
miRNA:   3'- -CUGCugCGGgggCC-GAGGCUCCU----CCG- -5'
21698 5' -63.7 NC_004812.1 + 13004 0.66 0.607289
Target:  5'- gGGCGGCGCUU---GCUCCGucGGGGCg -3'
miRNA:   3'- -CUGCUGCGGGggcCGAGGCucCUCCG- -5'
21698 5' -63.7 NC_004812.1 + 150404 0.66 0.607289
Target:  5'- gGGCGGCGUCCgCgGGCcgCCGGGcGccccGGGCc -3'
miRNA:   3'- -CUGCUGCGGG-GgCCGa-GGCUC-C----UCCG- -5'
21698 5' -63.7 NC_004812.1 + 143584 0.66 0.607289
Target:  5'- cGGCcccGCGaCCCCCGGCgaucaggccgccUCCGGcGGcGGCg -3'
miRNA:   3'- -CUGc--UGC-GGGGGCCG------------AGGCU-CCuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.