miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21699 3' -57.9 NC_004812.1 + 62414 0.66 0.858769
Target:  5'- cCGGCAGGGGaGaCUCGucUCGCGCg-- -3'
miRNA:   3'- -GCUGUCCUCaC-GAGCucAGCGCGgac -5'
21699 3' -57.9 NC_004812.1 + 66646 0.66 0.858769
Target:  5'- -aGCGGGAGgcGCgUCGGGaggCGCGCCg- -3'
miRNA:   3'- gcUGUCCUCa-CG-AGCUCa--GCGCGGac -5'
21699 3' -57.9 NC_004812.1 + 78949 0.66 0.851112
Target:  5'- gGuCGGGGGUGCgccgggggUCGGGggUGCGCCg- -3'
miRNA:   3'- gCuGUCCUCACG--------AGCUCa-GCGCGGac -5'
21699 3' -57.9 NC_004812.1 + 52895 0.66 0.851112
Target:  5'- cCGACGGuGcAGgGCUCGAgggcGUCGCGCUc- -3'
miRNA:   3'- -GCUGUC-C-UCaCGAGCU----CAGCGCGGac -5'
21699 3' -57.9 NC_004812.1 + 78985 0.66 0.851112
Target:  5'- gGuCGGGGGUGCgccgggggUCGGGggUGCGCCg- -3'
miRNA:   3'- gCuGUCCUCACG--------AGCUCa-GCGCGGac -5'
21699 3' -57.9 NC_004812.1 + 78541 0.66 0.850336
Target:  5'- aCGACuuccacgGGGAGcucgcggaGCUCGAG-CGCcGCCUGc -3'
miRNA:   3'- -GCUG-------UCCUCa-------CGAGCUCaGCG-CGGAC- -5'
21699 3' -57.9 NC_004812.1 + 71781 0.66 0.843263
Target:  5'- aGGCGGGGGgGCggGGGUCGCcgaaGCCg- -3'
miRNA:   3'- gCUGUCCUCaCGagCUCAGCG----CGGac -5'
21699 3' -57.9 NC_004812.1 + 14641 0.66 0.835229
Target:  5'- gGGCGGGAgcaggGUGCUCGuGaacgGCGCCUu -3'
miRNA:   3'- gCUGUCCU-----CACGAGCuCag--CGCGGAc -5'
21699 3' -57.9 NC_004812.1 + 116300 0.66 0.835229
Target:  5'- uGGCGGGGauGUGCUgGGGUCcGUGCUc- -3'
miRNA:   3'- gCUGUCCU--CACGAgCUCAG-CGCGGac -5'
21699 3' -57.9 NC_004812.1 + 156078 0.66 0.827016
Target:  5'- aGGCGGGAGgGCcCGGG-CGCGCg-- -3'
miRNA:   3'- gCUGUCCUCaCGaGCUCaGCGCGgac -5'
21699 3' -57.9 NC_004812.1 + 21152 0.66 0.827016
Target:  5'- gCGGCGGGGGU-CUCG-G-CGUGCCg- -3'
miRNA:   3'- -GCUGUCCUCAcGAGCuCaGCGCGGac -5'
21699 3' -57.9 NC_004812.1 + 125177 0.66 0.827016
Target:  5'- aGGCGGGAGgGCcCGGG-CGCGCg-- -3'
miRNA:   3'- gCUGUCCUCaCGaGCUCaGCGCGgac -5'
21699 3' -57.9 NC_004812.1 + 202 0.67 0.818632
Target:  5'- cCGcCGGGGGaggGCcCGGGUCGCGCa-- -3'
miRNA:   3'- -GCuGUCCUCa--CGaGCUCAGCGCGgac -5'
21699 3' -57.9 NC_004812.1 + 125711 0.67 0.818632
Target:  5'- cCGcCGGGGGaggGCcCGGGUCGCGCa-- -3'
miRNA:   3'- -GCuGUCCUCa--CGaGCUCAGCGCGgac -5'
21699 3' -57.9 NC_004812.1 + 128753 0.67 0.810085
Target:  5'- gCGGCcGGAGccggGCUCGGG-CGgGCCg- -3'
miRNA:   3'- -GCUGuCCUCa---CGAGCUCaGCgCGGac -5'
21699 3' -57.9 NC_004812.1 + 128489 0.67 0.810085
Target:  5'- cCGAuCAGGAGgagcaGCUCGAGgaaGcCGCCg- -3'
miRNA:   3'- -GCU-GUCCUCa----CGAGCUCag-C-GCGGac -5'
21699 3' -57.9 NC_004812.1 + 67302 0.67 0.810085
Target:  5'- gGGCGGGAGcggGCUCGGGgaggcgaGCGCg-- -3'
miRNA:   3'- gCUGUCCUCa--CGAGCUCag-----CGCGgac -5'
21699 3' -57.9 NC_004812.1 + 3245 0.67 0.810085
Target:  5'- gCGGCcGGAGccggGCUCGGG-CGgGCCg- -3'
miRNA:   3'- -GCUGuCCUCa---CGAGCUCaGCgCGGac -5'
21699 3' -57.9 NC_004812.1 + 152108 0.67 0.801381
Target:  5'- gCGACGuGGA--GCUCGAc-CGCGCCUGc -3'
miRNA:   3'- -GCUGU-CCUcaCGAGCUcaGCGCGGAC- -5'
21699 3' -57.9 NC_004812.1 + 26600 0.67 0.801381
Target:  5'- gCGACGuGGA--GCUCGAc-CGCGCCUGc -3'
miRNA:   3'- -GCUGU-CCUcaCGAGCUcaGCGCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.