miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21699 5' -58.8 NC_004812.1 + 69356 0.65 0.799501
Target:  5'- aCCAGCU-CAUCGUCGagcccuaCCUCCCUGc- -3'
miRNA:   3'- cGGUCGGuGUAGUAGC-------GGGGGGACau -5'
21699 5' -58.8 NC_004812.1 + 148128 0.66 0.791445
Target:  5'- cGCCGGCCGC-UCgAUCuCCaCCUCUGg- -3'
miRNA:   3'- -CGGUCGGUGuAG-UAGcGG-GGGGACau -5'
21699 5' -58.8 NC_004812.1 + 88406 0.66 0.791445
Target:  5'- gGCCGGCCgcgcgcggccggGCGUCcggCGCgCCCCCg--- -3'
miRNA:   3'- -CGGUCGG------------UGUAGua-GCG-GGGGGacau -5'
21699 5' -58.8 NC_004812.1 + 117227 0.66 0.791445
Target:  5'- cGCCGGCCGC-UCgAUCuCCaCCUCUGg- -3'
miRNA:   3'- -CGGUCGGUGuAG-UAGcGG-GGGGACau -5'
21699 5' -58.8 NC_004812.1 + 69568 0.66 0.791445
Target:  5'- cGCCGGCCGCGccgCAgcCGCCUCCgaGc- -3'
miRNA:   3'- -CGGUCGGUGUa--GUa-GCGGGGGgaCau -5'
21699 5' -58.8 NC_004812.1 + 75485 0.66 0.791445
Target:  5'- gGCCgcGGCCAgGUCcagcggcaCGCCCCCCa--- -3'
miRNA:   3'- -CGG--UCGGUgUAGua------GCGGGGGGacau -5'
21699 5' -58.8 NC_004812.1 + 120695 0.66 0.791445
Target:  5'- cGCCcgggAGCCGCGagcUCGUCGaggaCCCCUGc- -3'
miRNA:   3'- -CGG----UCGGUGU---AGUAGCgg--GGGGACau -5'
21699 5' -58.8 NC_004812.1 + 20182 0.66 0.788734
Target:  5'- cGCCgGGCCGCcuauuucucuuuauAUCGUCGUgaaguccagcgCCCCCUGc- -3'
miRNA:   3'- -CGG-UCGGUG--------------UAGUAGCG-----------GGGGGACau -5'
21699 5' -58.8 NC_004812.1 + 117156 0.66 0.782361
Target:  5'- cCUGGCCACcgaggcCAUCGCCCUgCUGa- -3'
miRNA:   3'- cGGUCGGUGua----GUAGCGGGGgGACau -5'
21699 5' -58.8 NC_004812.1 + 22611 0.66 0.782361
Target:  5'- cUCGGCCuCGUCGUCgauaaaauacauGCCCCCCg--- -3'
miRNA:   3'- cGGUCGGuGUAGUAG------------CGGGGGGacau -5'
21699 5' -58.8 NC_004812.1 + 53359 0.66 0.782361
Target:  5'- cGCC-GCCGCGUCGcccggcCGCCgCUCCUGc- -3'
miRNA:   3'- -CGGuCGGUGUAGUa-----GCGG-GGGGACau -5'
21699 5' -58.8 NC_004812.1 + 111137 0.66 0.781445
Target:  5'- cGCCAcgaagcuGCCGC-UCGggcuccUCGCCCCCCcGg- -3'
miRNA:   3'- -CGGU-------CGGUGuAGU------AGCGGGGGGaCau -5'
21699 5' -58.8 NC_004812.1 + 32686 0.66 0.773144
Target:  5'- gGCCGGCCGC-UC--CGCCCCgCCg--- -3'
miRNA:   3'- -CGGUCGGUGuAGuaGCGGGG-GGacau -5'
21699 5' -58.8 NC_004812.1 + 1785 0.66 0.773144
Target:  5'- gGCCGGCCGC-UC--CGCCCCgCCg--- -3'
miRNA:   3'- -CGGUCGGUGuAGuaGCGGGG-GGacau -5'
21699 5' -58.8 NC_004812.1 + 119397 0.66 0.772215
Target:  5'- -aCGGCCGCGUCGUCguggacgGCCCCgCgCUGc- -3'
miRNA:   3'- cgGUCGGUGUAGUAG-------CGGGG-G-GACau -5'
21699 5' -58.8 NC_004812.1 + 108296 0.66 0.763804
Target:  5'- gGCCucGGCCGCggCGUCGgCCUCCUc-- -3'
miRNA:   3'- -CGG--UCGGUGuaGUAGCgGGGGGAcau -5'
21699 5' -58.8 NC_004812.1 + 78644 0.66 0.763804
Target:  5'- gGCCGGCCcggACAcccUCuUCGCCCCCg---- -3'
miRNA:   3'- -CGGUCGG---UGU---AGuAGCGGGGGgacau -5'
21699 5' -58.8 NC_004812.1 + 113759 0.66 0.763804
Target:  5'- aGCgCGGCCAgGUaGUgGCCaCCCUUGUGc -3'
miRNA:   3'- -CG-GUCGGUgUAgUAgCGG-GGGGACAU- -5'
21699 5' -58.8 NC_004812.1 + 132720 0.66 0.763804
Target:  5'- cCCGGCCgACGUC--CGCUCCCCggcGUAc -3'
miRNA:   3'- cGGUCGG-UGUAGuaGCGGGGGGa--CAU- -5'
21699 5' -58.8 NC_004812.1 + 72636 0.66 0.763804
Target:  5'- gGCCgGGCCGCGa---CGCCCCCCa--- -3'
miRNA:   3'- -CGG-UCGGUGUaguaGCGGGGGGacau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.