miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21699 5' -58.8 NC_004812.1 + 132720 0.66 0.763804
Target:  5'- cCCGGCCgACGUC--CGCUCCCCggcGUAc -3'
miRNA:   3'- cGGUCGG-UGUAGuaGCGGGGGGa--CAU- -5'
21699 5' -58.8 NC_004812.1 + 43569 0.66 0.760034
Target:  5'- cGCCGGCCGCGgccguccguccggCG-CGCCCgCCCUc-- -3'
miRNA:   3'- -CGGUCGGUGUa------------GUaGCGGG-GGGAcau -5'
21699 5' -58.8 NC_004812.1 + 143415 0.66 0.754348
Target:  5'- cCCGGCgUGCAUCAUCGUCUgcguagCCCUGg- -3'
miRNA:   3'- cGGUCG-GUGUAGUAGCGGG------GGGACau -5'
21699 5' -58.8 NC_004812.1 + 15136 0.66 0.754348
Target:  5'- uCCGGCCGCGUCGccUCggggGCUCCCCg--- -3'
miRNA:   3'- cGGUCGGUGUAGU--AG----CGGGGGGacau -5'
21699 5' -58.8 NC_004812.1 + 106631 0.66 0.754348
Target:  5'- cGCCAGCuCACcggaGUCGCCgCUCCcGUAc -3'
miRNA:   3'- -CGGUCG-GUGuag-UAGCGG-GGGGaCAU- -5'
21699 5' -58.8 NC_004812.1 + 137459 0.66 0.754348
Target:  5'- ---cGCCGCcgCcgCGCCCCCCg--- -3'
miRNA:   3'- cgguCGGUGuaGuaGCGGGGGGacau -5'
21699 5' -58.8 NC_004812.1 + 41794 0.66 0.754348
Target:  5'- uGCCGGCCAuCGUCAacaGCUCCUCgcgGUu -3'
miRNA:   3'- -CGGUCGGU-GUAGUag-CGGGGGGa--CAu -5'
21699 5' -58.8 NC_004812.1 + 74088 0.67 0.744787
Target:  5'- cGCCucGGcCCGCAUCAgcagCGCCCCgagCUUGUc -3'
miRNA:   3'- -CGG--UC-GGUGUAGUa---GCGGGG---GGACAu -5'
21699 5' -58.8 NC_004812.1 + 42458 0.67 0.744787
Target:  5'- gGCCGGCCGCAUCcaucucccgaCGCCgUUCUGg- -3'
miRNA:   3'- -CGGUCGGUGUAGua--------GCGGgGGGACau -5'
21699 5' -58.8 NC_004812.1 + 121242 0.67 0.744787
Target:  5'- uCCuuuGCCACGgggggCGUCGCCCcggacaCCCUGg- -3'
miRNA:   3'- cGGu--CGGUGUa----GUAGCGGG------GGGACau -5'
21699 5' -58.8 NC_004812.1 + 50385 0.67 0.735129
Target:  5'- aGCCucgacGCCGC--CGUCGCCCCCUUc-- -3'
miRNA:   3'- -CGGu----CGGUGuaGUAGCGGGGGGAcau -5'
21699 5' -58.8 NC_004812.1 + 110008 0.67 0.735129
Target:  5'- cGCCAcCC-CGUCG-CGCCgCUCCUGUGc -3'
miRNA:   3'- -CGGUcGGuGUAGUaGCGG-GGGGACAU- -5'
21699 5' -58.8 NC_004812.1 + 134867 0.67 0.735129
Target:  5'- cGUCGGCgGCAga--CGCCCCCCgGUc -3'
miRNA:   3'- -CGGUCGgUGUaguaGCGGGGGGaCAu -5'
21699 5' -58.8 NC_004812.1 + 83778 0.67 0.735129
Target:  5'- cGCgCGGCCGCucgCGgggaGCCCCCC-GUGc -3'
miRNA:   3'- -CG-GUCGGUGua-GUag--CGGGGGGaCAU- -5'
21699 5' -58.8 NC_004812.1 + 8390 0.67 0.725383
Target:  5'- cGCCGGCCACccaagCgGCCCCCCc--- -3'
miRNA:   3'- -CGGUCGGUGuaguaG-CGGGGGGacau -5'
21699 5' -58.8 NC_004812.1 + 13046 0.67 0.725383
Target:  5'- gGCCGGCCcCG--GUCGCCCCCa---- -3'
miRNA:   3'- -CGGUCGGuGUagUAGCGGGGGgacau -5'
21699 5' -58.8 NC_004812.1 + 63077 0.67 0.715558
Target:  5'- cGCC-GCCGCAcCcgCGCCCCgCCUc-- -3'
miRNA:   3'- -CGGuCGGUGUaGuaGCGGGG-GGAcau -5'
21699 5' -58.8 NC_004812.1 + 90317 0.67 0.715558
Target:  5'- cGCCAGCCGCGaggcgcUCAuccUCGCCUUCgUGc- -3'
miRNA:   3'- -CGGUCGGUGU------AGU---AGCGGGGGgACau -5'
21699 5' -58.8 NC_004812.1 + 40294 0.67 0.715558
Target:  5'- cGCCAGCaggGCGaCAacggcCGCCCCCCcGUAc -3'
miRNA:   3'- -CGGUCGg--UGUaGUa----GCGGGGGGaCAU- -5'
21699 5' -58.8 NC_004812.1 + 26256 0.67 0.705663
Target:  5'- gGCCGcGCCGCcgCGggcCGUgCCCCUGg- -3'
miRNA:   3'- -CGGU-CGGUGuaGUa--GCGgGGGGACau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.