miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21699 5' -58.8 NC_004812.1 + 104996 0.69 0.61489
Target:  5'- cGCgGGCCGCcgCggCGCCCCUCg--- -3'
miRNA:   3'- -CGgUCGGUGuaGuaGCGGGGGGacau -5'
21699 5' -58.8 NC_004812.1 + 102761 0.7 0.534814
Target:  5'- aGgCGGCgGCGUCGUCgaGCCCCCCcgcGUGg -3'
miRNA:   3'- -CgGUCGgUGUAGUAG--CGGGGGGa--CAU- -5'
21699 5' -58.8 NC_004812.1 + 4082 0.7 0.534814
Target:  5'- cGCCGGCCGCGcCGccucCGCCCCCUg--- -3'
miRNA:   3'- -CGGUCGGUGUaGUa---GCGGGGGGacau -5'
21699 5' -58.8 NC_004812.1 + 75679 0.7 0.544663
Target:  5'- cGCCGGCCugcGCGagGUCcagcaGCCCCCCgGUGa -3'
miRNA:   3'- -CGGUCGG---UGUagUAG-----CGGGGGGaCAU- -5'
21699 5' -58.8 NC_004812.1 + 144240 0.7 0.544663
Target:  5'- cCCGGCCGCG-CGgccgggcgCGCCCCCCgccaagGUGg -3'
miRNA:   3'- cGGUCGGUGUaGUa-------GCGGGGGGa-----CAU- -5'
21699 5' -58.8 NC_004812.1 + 49531 0.69 0.584579
Target:  5'- cGUCGGCgAgGUCAUCGCCgCCCa--- -3'
miRNA:   3'- -CGGUCGgUgUAGUAGCGGgGGGacau -5'
21699 5' -58.8 NC_004812.1 + 46411 0.69 0.594658
Target:  5'- gGCCgacagcauGGCCAgGUCcaggCGCUCCCCUGg- -3'
miRNA:   3'- -CGG--------UCGGUgUAGua--GCGGGGGGACau -5'
21699 5' -58.8 NC_004812.1 + 138742 0.69 0.594658
Target:  5'- uGCCGGCCG----GUCGCCCCCgcggugccuCUGUGg -3'
miRNA:   3'- -CGGUCGGUguagUAGCGGGGG---------GACAU- -5'
21699 5' -58.8 NC_004812.1 + 10353 0.69 0.604764
Target:  5'- cGCCucGCCGCGUCG-CGCCCCgggCUGg- -3'
miRNA:   3'- -CGGu-CGGUGUAGUaGCGGGGg--GACau -5'
21699 5' -58.8 NC_004812.1 + 69437 0.7 0.52503
Target:  5'- cGCCGGCCGCAcgCggCGCaUCCUCUGUc -3'
miRNA:   3'- -CGGUCGGUGUa-GuaGCG-GGGGGACAu -5'
21699 5' -58.8 NC_004812.1 + 137797 0.7 0.515313
Target:  5'- cGCCcGCCGCA-CAccCGCCCCgCCUGg- -3'
miRNA:   3'- -CGGuCGGUGUaGUa-GCGGGG-GGACau -5'
21699 5' -58.8 NC_004812.1 + 60250 0.71 0.47723
Target:  5'- cGCCAgGCgGCGcUCGaaGCCCCCCUGg- -3'
miRNA:   3'- -CGGU-CGgUGU-AGUagCGGGGGGACau -5'
21699 5' -58.8 NC_004812.1 + 14135 0.78 0.198497
Target:  5'- cGCCAGCCGCGUCAgggCGCCCUCg---- -3'
miRNA:   3'- -CGGUCGGUGUAGUa--GCGGGGGgacau -5'
21699 5' -58.8 NC_004812.1 + 9103 0.76 0.265126
Target:  5'- cGCCGGCCGCcUCGcCGUCCCCCUc-- -3'
miRNA:   3'- -CGGUCGGUGuAGUaGCGGGGGGAcau -5'
21699 5' -58.8 NC_004812.1 + 56435 0.74 0.348767
Target:  5'- cGCCAGgCGCcgggcgAUCGUCGCCCCCUgGUu -3'
miRNA:   3'- -CGGUCgGUG------UAGUAGCGGGGGGaCAu -5'
21699 5' -58.8 NC_004812.1 + 79063 0.73 0.364413
Target:  5'- gGCCGGaCGCGuuugcUCGUCGCCCCCCg--- -3'
miRNA:   3'- -CGGUCgGUGU-----AGUAGCGGGGGGacau -5'
21699 5' -58.8 NC_004812.1 + 23452 0.73 0.397133
Target:  5'- gGCCGcguuuGCCGCGcUCGUCGUCCUCCUGc- -3'
miRNA:   3'- -CGGU-----CGGUGU-AGUAGCGGGGGGACau -5'
21699 5' -58.8 NC_004812.1 + 153742 0.72 0.44059
Target:  5'- cGCCGGCCGCcgccucGUCGUCguggacgccguGCCCCCCgaggaGUGg -3'
miRNA:   3'- -CGGUCGGUG------UAGUAG-----------CGGGGGGa----CAU- -5'
21699 5' -58.8 NC_004812.1 + 117692 0.71 0.458715
Target:  5'- gGCCGGCCcgcgccccccgGgGUCGcgggagCGCCCCCCUGa- -3'
miRNA:   3'- -CGGUCGG-----------UgUAGUa-----GCGGGGGGACau -5'
21699 5' -58.8 NC_004812.1 + 17512 0.71 0.467925
Target:  5'- cCCAGCCGCGUCuuUCgGCUCCCC-GUGc -3'
miRNA:   3'- cGGUCGGUGUAGu-AG-CGGGGGGaCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.