miRNA display CGI


Results 1 - 20 of 349 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21700 3' -55.9 NC_004812.1 + 105458 0.66 0.938124
Target:  5'- -gGGGUCGCGGaGCgaggacggggaGCGGAG-GACGg- -3'
miRNA:   3'- ggCCCAGCGCC-CG-----------CGCUUUaCUGUag -5'
21700 3' -55.9 NC_004812.1 + 56727 0.66 0.938124
Target:  5'- -aGGGacUCGUGGGCGCGGccGUGGgGg- -3'
miRNA:   3'- ggCCC--AGCGCCCGCGCUu-UACUgUag -5'
21700 3' -55.9 NC_004812.1 + 51189 0.66 0.938124
Target:  5'- gCGGG-CGCGGGCGCcg---GGCc-- -3'
miRNA:   3'- gGCCCaGCGCCCGCGcuuuaCUGuag -5'
21700 3' -55.9 NC_004812.1 + 145979 0.66 0.938124
Target:  5'- gCUGGGggccgugcugUGCGGGguCGCGuauuacAUGACGUCg -3'
miRNA:   3'- -GGCCCa---------GCGCCC--GCGCuu----UACUGUAG- -5'
21700 3' -55.9 NC_004812.1 + 59207 0.66 0.938124
Target:  5'- gCCGGcGU-GCGGGUccagcgccaGCGAcAUGGCGUg -3'
miRNA:   3'- -GGCC-CAgCGCCCG---------CGCUuUACUGUAg -5'
21700 3' -55.9 NC_004812.1 + 143222 0.66 0.938124
Target:  5'- gCCGGG-CGCGcGCGCcucGAGGUGcACAg- -3'
miRNA:   3'- -GGCCCaGCGCcCGCG---CUUUAC-UGUag -5'
21700 3' -55.9 NC_004812.1 + 139542 0.66 0.938124
Target:  5'- aCuGGUCGCGGcaGCGCGcAAAguacGCGUCg -3'
miRNA:   3'- gGcCCAGCGCC--CGCGC-UUUac--UGUAG- -5'
21700 3' -55.9 NC_004812.1 + 60005 0.66 0.938124
Target:  5'- uUCGGGUcCGCGGG-GCc----GGCGUCg -3'
miRNA:   3'- -GGCCCA-GCGCCCgCGcuuuaCUGUAG- -5'
21700 3' -55.9 NC_004812.1 + 45406 0.66 0.938124
Target:  5'- gCGGuGUCGCccaccgaagcagGGGCGCGG--UGGCcaccGUCa -3'
miRNA:   3'- gGCC-CAGCG------------CCCGCGCUuuACUG----UAG- -5'
21700 3' -55.9 NC_004812.1 + 124637 0.66 0.937649
Target:  5'- gCCGcGGcCGgGGG-GCGAGAUccugggcGACGUCc -3'
miRNA:   3'- -GGC-CCaGCgCCCgCGCUUUA-------CUGUAG- -5'
21700 3' -55.9 NC_004812.1 + 98514 0.66 0.937649
Target:  5'- gCCGGGUCcCGGGCggccccgGCGAcgaGcCGUCg -3'
miRNA:   3'- -GGCCCAGcGCCCG-------CGCUuuaCuGUAG- -5'
21700 3' -55.9 NC_004812.1 + 40201 0.66 0.937649
Target:  5'- gCGGGcCGCGGgggcucuGCGCGggGguccGCGUUg -3'
miRNA:   3'- gGCCCaGCGCC-------CGCGCuuUac--UGUAG- -5'
21700 3' -55.9 NC_004812.1 + 136382 0.66 0.936694
Target:  5'- cCCGGcggccgcgcuagccGUUGCGGGCGCcacGUG-CGUCc -3'
miRNA:   3'- -GGCC--------------CAGCGCCCGCGcuuUACuGUAG- -5'
21700 3' -55.9 NC_004812.1 + 12130 0.66 0.933276
Target:  5'- -gGGGUUGgGGGCGCGc---GGCGc- -3'
miRNA:   3'- ggCCCAGCgCCCGCGCuuuaCUGUag -5'
21700 3' -55.9 NC_004812.1 + 52356 0.66 0.933276
Target:  5'- gCGGGUCGUuagaaaucuggGGGCGCGccgcgcaccUGGCAc- -3'
miRNA:   3'- gGCCCAGCG-----------CCCGCGCuuu------ACUGUag -5'
21700 3' -55.9 NC_004812.1 + 72133 0.66 0.933276
Target:  5'- gCGGGUCGggaGGGUGCGggGccgggggaGGCGg- -3'
miRNA:   3'- gGCCCAGCg--CCCGCGCuuUa-------CUGUag -5'
21700 3' -55.9 NC_004812.1 + 67692 0.66 0.933276
Target:  5'- gCCaGGGUUccgaGCaGGGCGCG-GGUGGCGg- -3'
miRNA:   3'- -GG-CCCAG----CG-CCCGCGCuUUACUGUag -5'
21700 3' -55.9 NC_004812.1 + 32794 0.66 0.933276
Target:  5'- cCCGGGUC-UGGGCcucgacGCGGAAgccgGGCGc- -3'
miRNA:   3'- -GGCCCAGcGCCCG------CGCUUUa---CUGUag -5'
21700 3' -55.9 NC_004812.1 + 16585 0.66 0.933276
Target:  5'- aCCGGGccCGCGGGCG-Gcag-GGCcgCa -3'
miRNA:   3'- -GGCCCa-GCGCCCGCgCuuuaCUGuaG- -5'
21700 3' -55.9 NC_004812.1 + 113154 0.66 0.933276
Target:  5'- uCCGGGgCGCgaGGGUcgGCGGAggGccGCGUCg -3'
miRNA:   3'- -GGCCCaGCG--CCCG--CGCUUuaC--UGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.