miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21700 5' -55.4 NC_004812.1 + 139606 0.66 0.927826
Target:  5'- cGGcuCgaGgcUCUGacucCGCGCCCCGGAGc -3'
miRNA:   3'- -UCuuGgaCaaAGAC----GCGCGGGGUCUC- -5'
21700 5' -55.4 NC_004812.1 + 150690 0.66 0.927826
Target:  5'- gGGGGCCUGcccggggUCUGCcugccgcccgGCgGCCCCuGAGc -3'
miRNA:   3'- -UCUUGGACaa-----AGACG----------CG-CGGGGuCUC- -5'
21700 5' -55.4 NC_004812.1 + 69821 0.66 0.927826
Target:  5'- gGGGGCCgagGgggUUCgccgucCGCGUCCCAGAa -3'
miRNA:   3'- -UCUUGGa--Ca--AAGac----GCGCGGGGUCUc -5'
21700 5' -55.4 NC_004812.1 + 76260 0.66 0.927826
Target:  5'- cGGGCCcGgcUgUGCGgGCCCgGGGGu -3'
miRNA:   3'- uCUUGGaCaaAgACGCgCGGGgUCUC- -5'
21700 5' -55.4 NC_004812.1 + 88131 0.66 0.922374
Target:  5'- cAGGACCUGgccuacgccaUCgUGCGCGCCgCGGc- -3'
miRNA:   3'- -UCUUGGACaa--------AG-ACGCGCGGgGUCuc -5'
21700 5' -55.4 NC_004812.1 + 101031 0.66 0.922374
Target:  5'- cGAGCCUGgggcgCUGCGUGCgCgAGcAGc -3'
miRNA:   3'- uCUUGGACaaa--GACGCGCGgGgUC-UC- -5'
21700 5' -55.4 NC_004812.1 + 45110 0.66 0.922374
Target:  5'- gGGGGCgUGagUCgggGCGaUGuCCCCAGAGg -3'
miRNA:   3'- -UCUUGgACaaAGa--CGC-GC-GGGGUCUC- -5'
21700 5' -55.4 NC_004812.1 + 63734 0.66 0.922374
Target:  5'- cGGAGCgUGcg-CUGCgGCGCUucuCCGGAGa -3'
miRNA:   3'- -UCUUGgACaaaGACG-CGCGG---GGUCUC- -5'
21700 5' -55.4 NC_004812.1 + 16723 0.66 0.920691
Target:  5'- cGGGGCCgGUcccgCUcgcccgucgacgcaGgGCGCCCCGGGGg -3'
miRNA:   3'- -UCUUGGaCAaa--GA--------------CgCGCGGGGUCUC- -5'
21700 5' -55.4 NC_004812.1 + 103589 0.66 0.916679
Target:  5'- cGAugCgcGUgcCcGCGCGCCCCGGGa -3'
miRNA:   3'- uCUugGa-CAaaGaCGCGCGGGGUCUc -5'
21700 5' -55.4 NC_004812.1 + 29951 0.66 0.910742
Target:  5'- gGGGGCCgGg--CU-CGCGCCgCCGGGGa -3'
miRNA:   3'- -UCUUGGaCaaaGAcGCGCGG-GGUCUC- -5'
21700 5' -55.4 NC_004812.1 + 119935 0.66 0.910742
Target:  5'- gAGAACgUGcucuUUUCcgaGCGgGCCUCGGAGg -3'
miRNA:   3'- -UCUUGgAC----AAAGa--CGCgCGGGGUCUC- -5'
21700 5' -55.4 NC_004812.1 + 155460 0.66 0.910742
Target:  5'- gGGGGCCgGg--CU-CGCGCCgCCGGGGa -3'
miRNA:   3'- -UCUUGGaCaaaGAcGCGCGG-GGUCUC- -5'
21700 5' -55.4 NC_004812.1 + 62783 0.66 0.910742
Target:  5'- cGGAugGCCgcggccCUGCGCGaguCCCCGGGGg -3'
miRNA:   3'- -UCU--UGGacaaa-GACGCGC---GGGGUCUC- -5'
21700 5' -55.4 NC_004812.1 + 10853 0.66 0.910742
Target:  5'- gGGGACgUcGggUCgcuccgcccGCGCGCCCCGGGu -3'
miRNA:   3'- -UCUUGgA-CaaAGa--------CGCGCGGGGUCUc -5'
21700 5' -55.4 NC_004812.1 + 211 0.66 0.904564
Target:  5'- gAGGGCCcGggUC-GCGCaGCCCCGGc- -3'
miRNA:   3'- -UCUUGGaCaaAGaCGCG-CGGGGUCuc -5'
21700 5' -55.4 NC_004812.1 + 125720 0.66 0.904564
Target:  5'- gAGGGCCcGggUC-GCGCaGCCCCGGc- -3'
miRNA:   3'- -UCUUGGaCaaAGaCGCG-CGGGGUCuc -5'
21700 5' -55.4 NC_004812.1 + 16127 0.66 0.904564
Target:  5'- cGGACCUGgcgacgcagCUGCGCGaCCgGGAc -3'
miRNA:   3'- uCUUGGACaaa------GACGCGCgGGgUCUc -5'
21700 5' -55.4 NC_004812.1 + 58297 0.66 0.898147
Target:  5'- cGAGCCaGcacCcGCGCGCCgCCGGAGc -3'
miRNA:   3'- uCUUGGaCaaaGaCGCGCGG-GGUCUC- -5'
21700 5' -55.4 NC_004812.1 + 105912 0.66 0.898147
Target:  5'- -uGGCCUGggUCcGuCGCGCCCgAGGa -3'
miRNA:   3'- ucUUGGACaaAGaC-GCGCGGGgUCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.