miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21701 5' -55.9 NC_004812.1 + 1308 0.66 0.930925
Target:  5'- cCGAGGGCggucCGCgGGCGGuccgcgGGCG-GUCCg -3'
miRNA:   3'- aGUUCCUGa---GCG-UCGCC------UCGUgCAGG- -5'
21701 5' -55.9 NC_004812.1 + 80465 0.66 0.930925
Target:  5'- gCAAGGuGgUCGCGGCGacgcggcGGCGCG-CCg -3'
miRNA:   3'- aGUUCC-UgAGCGUCGCc------UCGUGCaGG- -5'
21701 5' -55.9 NC_004812.1 + 74653 0.66 0.930925
Target:  5'- gUCGGGGACgCcCuGCGGAcCACGUgCCg -3'
miRNA:   3'- -AGUUCCUGaGcGuCGCCUcGUGCA-GG- -5'
21701 5' -55.9 NC_004812.1 + 102747 0.66 0.930925
Target:  5'- gUCGAGGGacgCGUAgGCGGcGGCGuCGUCg -3'
miRNA:   3'- -AGUUCCUga-GCGU-CGCC-UCGU-GCAGg -5'
21701 5' -55.9 NC_004812.1 + 128101 0.66 0.930925
Target:  5'- cCGAGGcGCgugCGCGcGCGGuagcGCACGUUg -3'
miRNA:   3'- aGUUCC-UGa--GCGU-CGCCu---CGUGCAGg -5'
21701 5' -55.9 NC_004812.1 + 114775 0.66 0.930925
Target:  5'- gUUggGGAC-CGCcGCGGccaugcAGCACcuacgGUCCa -3'
miRNA:   3'- -AGuuCCUGaGCGuCGCC------UCGUG-----CAGG- -5'
21701 5' -55.9 NC_004812.1 + 2593 0.66 0.930925
Target:  5'- cCGAGGcGCgugCGCGcGCGGuagcGCACGUUg -3'
miRNA:   3'- aGUUCC-UGa--GCGU-CGCCu---CGUGCAGg -5'
21701 5' -55.9 NC_004812.1 + 123817 0.66 0.930925
Target:  5'- aCGGGGuGC-CGCgGGCGGGGCccggGCGcCCg -3'
miRNA:   3'- aGUUCC-UGaGCG-UCGCCUCG----UGCaGG- -5'
21701 5' -55.9 NC_004812.1 + 151298 0.66 0.930925
Target:  5'- cCGGcGGACgacgCGCucGCGGAGCuCG-CCg -3'
miRNA:   3'- aGUU-CCUGa---GCGu-CGCCUCGuGCaGG- -5'
21701 5' -55.9 NC_004812.1 + 135225 0.66 0.930925
Target:  5'- gCGAGacGGC-CGCGgcGCGGAGCucgcGCGUCUa -3'
miRNA:   3'- aGUUC--CUGaGCGU--CGCCUCG----UGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 13397 0.66 0.930925
Target:  5'- gUCGGGGg--CGCGGCGGGGgugACGgCCg -3'
miRNA:   3'- -AGUUCCugaGCGUCGCCUCg--UGCaGG- -5'
21701 5' -55.9 NC_004812.1 + 154869 0.66 0.930925
Target:  5'- gCGcGGGCUCGgGccGCGGAggcGCGCGgggCCg -3'
miRNA:   3'- aGUuCCUGAGCgU--CGCCU---CGUGCa--GG- -5'
21701 5' -55.9 NC_004812.1 + 32209 0.66 0.930925
Target:  5'- cCGAGGGCggucCGCgGGCGGuccgcgGGCG-GUCCg -3'
miRNA:   3'- aGUUCCUGa---GCG-UCGCC------UCGUgCAGG- -5'
21701 5' -55.9 NC_004812.1 + 29361 0.66 0.930925
Target:  5'- gCGcGGGCUCGgGccGCGGAggcGCGCGgggCCg -3'
miRNA:   3'- aGUuCCUGAGCgU--CGCCU---CGUGCa--GG- -5'
21701 5' -55.9 NC_004812.1 + 154718 0.66 0.930925
Target:  5'- aCGGGGuGC-CGCgGGCGGGGCccggGCGcCCg -3'
miRNA:   3'- aGUUCC-UGaGCG-UCGCCUCG----UGCaGG- -5'
21701 5' -55.9 NC_004812.1 + 25790 0.66 0.930925
Target:  5'- cCGGcGGACgacgCGCucGCGGAGCuCG-CCg -3'
miRNA:   3'- aGUU-CCUGa---GCGu-CGCCUCGuGCaGG- -5'
21701 5' -55.9 NC_004812.1 + 88297 0.66 0.930414
Target:  5'- gCGGGGugUgcaaccuggccagCGUcaaccuGGCGGAGUGCGUCg -3'
miRNA:   3'- aGUUCCugA-------------GCG------UCGCCUCGUGCAGg -5'
21701 5' -55.9 NC_004812.1 + 149000 0.66 0.925702
Target:  5'- -gAGGGugU-GCGGCGGgccgGGCGCGgcggcgCCg -3'
miRNA:   3'- agUUCCugAgCGUCGCC----UCGUGCa-----GG- -5'
21701 5' -55.9 NC_004812.1 + 153172 0.66 0.925702
Target:  5'- aCGGGGACcacggggggCGCGGCGGcGC-CGgagggCCg -3'
miRNA:   3'- aGUUCCUGa--------GCGUCGCCuCGuGCa----GG- -5'
21701 5' -55.9 NC_004812.1 + 30400 0.66 0.925702
Target:  5'- cCGGGGg--CGCGGCGGccuucaGGCACGUg- -3'
miRNA:   3'- aGUUCCugaGCGUCGCC------UCGUGCAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.