miRNA display CGI


Results 1 - 20 of 368 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21701 5' -55.9 NC_004812.1 + 114522 1.11 0.002248
Target:  5'- uUCAAGGACUCGCAGCGGAGCACGUCCc -3'
miRNA:   3'- -AGUUCCUGAGCGUCGCCUCGUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 38819 0.83 0.174357
Target:  5'- gUCGGGGGCUgcggcgcgcgccggCGCGGCcggGGGGCGCGUCCg -3'
miRNA:   3'- -AGUUCCUGA--------------GCGUCG---CCUCGUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 7918 0.83 0.174357
Target:  5'- gUCGGGGGCUgcggcgcgcgccggCGCGGCcggGGGGCGCGUCCg -3'
miRNA:   3'- -AGUUCCUGA--------------GCGUCG---CCUCGUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 142298 0.82 0.189334
Target:  5'- aCGAGGGCcccgggccggCGCGGCGGGGCGCGcCCu -3'
miRNA:   3'- aGUUCCUGa---------GCGUCGCCUCGUGCaGG- -5'
21701 5' -55.9 NC_004812.1 + 122237 0.81 0.208995
Target:  5'- -gGGGGGCUCgGCGGCGGGGCGCGggcggggggCCa -3'
miRNA:   3'- agUUCCUGAG-CGUCGCCUCGUGCa--------GG- -5'
21701 5' -55.9 NC_004812.1 + 153138 0.81 0.208995
Target:  5'- -gGGGGGCUCgGCGGCGGGGCGCGggcggggggCCa -3'
miRNA:   3'- agUUCCUGAG-CGUCGCCUCGUGCa--------GG- -5'
21701 5' -55.9 NC_004812.1 + 147895 0.8 0.247629
Target:  5'- --cGGGGCUCGCGaggggggcGCGGAGgGCGUCCc -3'
miRNA:   3'- aguUCCUGAGCGU--------CGCCUCgUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 128897 0.8 0.259704
Target:  5'- cUCGAGGGCg-GCGGCGGAGgGCG-CCg -3'
miRNA:   3'- -AGUUCCUGagCGUCGCCUCgUGCaGG- -5'
21701 5' -55.9 NC_004812.1 + 3389 0.8 0.259704
Target:  5'- cUCGAGGGCg-GCGGCGGAGgGCG-CCg -3'
miRNA:   3'- -AGUUCCUGagCGUCGCCUCgUGCaGG- -5'
21701 5' -55.9 NC_004812.1 + 81181 0.79 0.291989
Target:  5'- ---cGGccGC-CGCGGCGGAGCugGUCCg -3'
miRNA:   3'- aguuCC--UGaGCGUCGCCUCGugCAGG- -5'
21701 5' -55.9 NC_004812.1 + 91200 0.78 0.305756
Target:  5'- cUCGGGGGCggggggCGCGgcguccagcucGCGGAGCGCGUCg -3'
miRNA:   3'- -AGUUCCUGa-----GCGU-----------CGCCUCGUGCAGg -5'
21701 5' -55.9 NC_004812.1 + 80278 0.78 0.305756
Target:  5'- gCGAGGGgUaGCGGCGG-GCGCGUCCc -3'
miRNA:   3'- aGUUCCUgAgCGUCGCCuCGUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 139532 0.78 0.312823
Target:  5'- gCGGGGACagCGCcacGgGGGGCGCGUCCg -3'
miRNA:   3'- aGUUCCUGa-GCGu--CgCCUCGUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 103680 0.78 0.334766
Target:  5'- gUCAGGGcCUCGCaguaGGCGG-GCAgGUCCu -3'
miRNA:   3'- -AGUUCCuGAGCG----UCGCCuCGUgCAGG- -5'
21701 5' -55.9 NC_004812.1 + 96169 0.77 0.341564
Target:  5'- uUCGAGGGCggcggcgagguggUCGCGcCGGAGCGgGUCCa -3'
miRNA:   3'- -AGUUCCUG-------------AGCGUcGCCUCGUgCAGG- -5'
21701 5' -55.9 NC_004812.1 + 31574 0.76 0.398631
Target:  5'- ---cGGGCggCGCgAGgGGAGCGCGUCCc -3'
miRNA:   3'- aguuCCUGa-GCG-UCgCCUCGUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 76836 0.76 0.398631
Target:  5'- cCGGGGGCgcgccugCGCGGCGucgggcaGGCACGUCCa -3'
miRNA:   3'- aGUUCCUGa------GCGUCGCc------UCGUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 673 0.76 0.398631
Target:  5'- ---cGGGCggCGCgAGgGGAGCGCGUCCc -3'
miRNA:   3'- aguuCCUGa-GCG-UCgCCUCGUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 49236 0.76 0.407145
Target:  5'- cCGAGGcgaUCGC-GCGGGGgGCGUCCg -3'
miRNA:   3'- aGUUCCug-AGCGuCGCCUCgUGCAGG- -5'
21701 5' -55.9 NC_004812.1 + 125270 0.76 0.407145
Target:  5'- ---cGGGCUCGCGGCGGGcGCGCGcgagagcgCCg -3'
miRNA:   3'- aguuCCUGAGCGUCGCCU-CGUGCa-------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.