miRNA display CGI

Results 61 - 80 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	114173	0.66	0.977884
	Target:  5'- gGCCUu-CCGCCggaggaaggGGCCGGacaAGCGGCc -3' miRNA:   3'- -CGGAuuGGUGG---------UCGGUUgugUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	30369	0.66	0.981691
	Target:  5'- aGCCgcucGGCgGCCGGgucggggcucuccuCCGgggGCGCGGCGGCc -3' miRNA:   3'- -CGGa---UUGgUGGUC--------------GGU---UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	54663	0.66	0.977884
	Target:  5'- cGCCgcggGGcCCAgCGGCCGGguCG-CGGCg -3' miRNA:   3'- -CGGa---UU-GGUgGUCGGUUguGUuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	78116	0.66	0.977884
	Target:  5'- gGCCacgagAACCAgCuucGCCAGCGCca-GGCg -3' miRNA:   3'- -CGGa----UUGGUgGu--CGGUUGUGuugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	28783	0.66	0.980188
	Target:  5'- cGCCccGCUcuuuUCGGCCGugGCG-CGGCg -3' miRNA:   3'- -CGGauUGGu---GGUCGGUugUGUuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15948	0.66	0.982104
	Target:  5'- uGCCgGGCUucgGCCGGgCGACGgacgccccgcggcCGGCGGCg -3' miRNA:   3'- -CGGaUUGG---UGGUCgGUUGU-------------GUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	87694	0.66	0.980188
	Target:  5'- gGCCccAUC-CUGGCC--CGCAGCGGCg -3' miRNA:   3'- -CGGauUGGuGGUCGGuuGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	9387	0.66	0.977884
	Target:  5'- gGCCacGCCcuauuuCCGGCCAACgcccuggaaacgACAACGcGCu -3' miRNA:   3'- -CGGauUGGu-----GGUCGGUUG------------UGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	152577	0.66	0.980188
	Target:  5'- gGCCgccGCCGCC-GCCGAgUGCcucACGGCc -3' miRNA:   3'- -CGGau-UGGUGGuCGGUU-GUGu--UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	110201	0.66	0.982308
	Target:  5'- aCCUGgacGCgCugCAcgagacGCCGACGgCAACGGCc -3' miRNA:   3'- cGGAU---UG-GugGU------CGGUUGU-GUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	76791	0.66	0.980188
	Target:  5'- gGCCcagcAGCCcCCagaGGUCGGCGCGcaggGCGGCg -3' miRNA:   3'- -CGGa---UUGGuGG---UCGGUUGUGU----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	127226	0.66	0.980188
	Target:  5'- cGCCagacuCCGcCCGGCCccGCGCGccuccGCGGCc -3' miRNA:   3'- -CGGauu--GGU-GGUCGGu-UGUGU-----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151961	0.66	0.977884
	Target:  5'- gGCgCUAcgagGCCGCCGGCgCGcccGCGCccguGugGGCg -3' miRNA:   3'- -CG-GAU----UGGUGGUCG-GU---UGUG----UugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	134991	0.66	0.975388
	Target:  5'- gGCCgagcGCCGCCgGGCCGACucgccCGGUc -3' miRNA:   3'- -CGGau--UGGUGG-UCGGUUGuguu-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	143519	0.66	0.983878
	Target:  5'- cGCCgucGGCCGCCucgagcauuuccGCCGugAacgaGGCGGCc -3' miRNA:   3'- -CGGa--UUGGUGGu-----------CGGUugUg---UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	100992	0.66	0.982308
	Target:  5'- cGCCccagaaaGGCCGCCucGCgCGGCGCGA-GGCa -3' miRNA:   3'- -CGGa------UUGGUGGu-CG-GUUGUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	79399	0.66	0.984253
	Target:  5'- gGCCg---CGCCAGCUGGCuCGGgGGCc -3' miRNA:   3'- -CGGauugGUGGUCGGUUGuGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	36298	0.66	0.984067
	Target:  5'- cGCCgaGACCGgCGucGCCAcgaacucGCAC-ACGGCg -3' miRNA:   3'- -CGGa-UUGGUgGU--CGGU-------UGUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	85533	0.66	0.975388
	Target:  5'- cGCCUgcgGACCACCAacaCCAu--CcACGGCa -3' miRNA:   3'- -CGGA---UUGGUGGUc--GGUuguGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	75473	0.66	0.984253
	Target:  5'- gGUCUGcuccGCgGCCgcGGCCAGgucCAGCGGCa -3' miRNA:   3'- -CGGAU----UGgUGG--UCGGUUgu-GUUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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