miRNA display CGI

Results 81 - 100 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	76791	0.66	0.980188
	Target:  5'- gGCCcagcAGCCcCCagaGGUCGGCGCGcaggGCGGCg -3' miRNA:   3'- -CGGa---UUGGuGG---UCGGUUGUGU----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	114774	0.66	0.982308
	Target:  5'- gGUUgggGACCGCCgcGGCCAugcaGCACcuACGGUc -3' miRNA:   3'- -CGGa--UUGGUGG--UCGGU----UGUGu-UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	60817	0.66	0.984253
	Target:  5'- gGCCgagaacccgAACUGCCGGCgGGCGCGcucgcagaGGCg -3' miRNA:   3'- -CGGa--------UUGGUGGUCGgUUGUGUug------CCG- -5'
21702	3'	-52.4	NC_004812.1	+	99694	0.66	0.980188
	Target:  5'- cGCCU--CCGCCAGggacUCGGuCGCGgccGCGGCg -3' miRNA:   3'- -CGGAuuGGUGGUC----GGUU-GUGU---UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	86578	0.66	0.986032
	Target:  5'- cGCCUuugucaccCCACCcGCC--CGCGGCGGg -3' miRNA:   3'- -CGGAuu------GGUGGuCGGuuGUGUUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	81288	0.66	0.984984
	Target:  5'- gGCgaGACCugCGucGCCAGCGCgucgcagacccccagGugGGCc -3' miRNA:   3'- -CGgaUUGGugGU--CGGUUGUG---------------UugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	108479	0.66	0.984984
	Target:  5'- gGCgCUGACggucgcggucaacggCGCCAGCgcccgCAcggggcGCACGGCGGCg -3' miRNA:   3'- -CG-GAUUG---------------GUGGUCG-----GU------UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	75473	0.66	0.984253
	Target:  5'- gGUCUGcuccGCgGCCgcGGCCAGgucCAGCGGCa -3' miRNA:   3'- -CGGAU----UGgUGG--UCGGUUgu-GUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	102181	0.66	0.984253
	Target:  5'- gGCCc-GCgGCgGGCCcaucGACACccGGCGGCg -3' miRNA:   3'- -CGGauUGgUGgUCGG----UUGUG--UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	50917	0.66	0.982308
	Target:  5'- gGCCccGCCACCcGCCuuCGgGGCcccGGCg -3' miRNA:   3'- -CGGauUGGUGGuCGGuuGUgUUG---CCG- -5'
21702	3'	-52.4	NC_004812.1	+	127226	0.66	0.980188
	Target:  5'- cGCCagacuCCGcCCGGCCccGCGCGccuccGCGGCc -3' miRNA:   3'- -CGGauu--GGU-GGUCGGu-UGUGU-----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	93363	0.66	0.975388
	Target:  5'- cGCCUccucGACCcCCAGCaugugcguCAcCGCGACGGg -3' miRNA:   3'- -CGGA----UUGGuGGUCG--------GUuGUGUUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	44924	0.66	0.977884
	Target:  5'- cGCC-AGCgGCCAcgucGCCGACgACGgggaGCGGUa -3' miRNA:   3'- -CGGaUUGgUGGU----CGGUUG-UGU----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	114173	0.66	0.977884
	Target:  5'- gGCCUu-CCGCCggaggaaggGGCCGGacaAGCGGCc -3' miRNA:   3'- -CGGAuuGGUGG---------UCGGUUgugUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	98629	0.66	0.984253
	Target:  5'- gGCCgucgcGGCCGCgCugcGCCcgGGCGCGACGcGCg -3' miRNA:   3'- -CGGa----UUGGUG-Gu--CGG--UUGUGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	96194	0.66	0.982104
	Target:  5'- cGCCggAGCgGguCCAgacgcgcgucgacGCgCAGCGCAACGGCu -3' miRNA:   3'- -CGGa-UUGgU--GGU-------------CG-GUUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	151123	0.66	0.980188
	Target:  5'- cGCCgccGCCGCCGuguccccgcGCCAGCugGcccuGCuGGCc -3' miRNA:   3'- -CGGau-UGGUGGU---------CGGUUGugU----UG-CCG- -5'
21702	3'	-52.4	NC_004812.1	+	118785	0.66	0.982308
	Target:  5'- cCCccACC-CCGGCCccgcgGGCGCAGCGcGCc -3' miRNA:   3'- cGGauUGGuGGUCGG-----UUGUGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	40224	0.66	0.984067
	Target:  5'- ---cGACCGCCcgcgccuGGCCGGCGgCGACGaGCc -3' miRNA:   3'- cggaUUGGUGG-------UCGGUUGU-GUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	14791	0.66	0.977884
	Target:  5'- cGCCgacCCGC--GCCAugGCcgAGCGGCa -3' miRNA:   3'- -CGGauuGGUGguCGGUugUG--UUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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