miRNA display CGI

Results 101 - 120 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	97094	0.66	0.977884
	Target:  5'- cGCCgcguucuCCGCCAucaagcgcGCCGACGuggccgaGACGGCc -3' miRNA:   3'- -CGGauu----GGUGGU--------CGGUUGUg------UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	72727	0.66	0.975388
	Target:  5'- cGCCUu-CCACaaaGGagGACGgGGCGGCa -3' miRNA:   3'- -CGGAuuGGUGg--UCggUUGUgUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	81416	0.66	0.980188
	Target:  5'- -aCUGACCGCguCGGCCAugGCGucCGGn -3' miRNA:   3'- cgGAUUGGUG--GUCGGUugUGUu-GCCg -5'
21702	3'	-52.4	NC_004812.1	+	44647	0.66	0.982308
	Target:  5'- cGCCUGAgCGCCucuaucGCCGAaACGuuGCGGg -3' miRNA:   3'- -CGGAUUgGUGGu-----CGGUUgUGU--UGCCg -5'
21702	3'	-52.4	NC_004812.1	+	127654	0.66	0.986032
	Target:  5'- gGCC---CCGCgGGCgGggcuCGCGGCGGCg -3' miRNA:   3'- -CGGauuGGUGgUCGgUu---GUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	64629	0.66	0.983878
	Target:  5'- aCCgucacAACCAUCGGCCGcgacaugcugcuCGCAACGcGCg -3' miRNA:   3'- cGGa----UUGGUGGUCGGUu-----------GUGUUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	81288	0.66	0.984984
	Target:  5'- gGCgaGACCugCGucGCCAGCGCgucgcagacccccagGugGGCc -3' miRNA:   3'- -CGgaUUGGugGU--CGGUUGUG---------------UugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	119871	0.66	0.980188
	Target:  5'- cGCCUcccgagcgcGCCGCCGGCCcGCAgAGCccgccGCg -3' miRNA:   3'- -CGGAu--------UGGUGGUCGGuUGUgUUGc----CG- -5'
21702	3'	-52.4	NC_004812.1	+	84696	0.66	0.982308
	Target:  5'- gGCCaGGCCcgcACCGGggGACGCGucggACGGCg -3' miRNA:   3'- -CGGaUUGG---UGGUCggUUGUGU----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	127585	0.66	0.986032
	Target:  5'- cGCCccccgcguCUACCAGUCcuCGgGGCGGCc -3' miRNA:   3'- -CGGauu-----GGUGGUCGGuuGUgUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	58578	0.66	0.985689
	Target:  5'- cGCCgagAACCGCUugaugaAGCCcAGCGCcucgauguccucGCGGCu -3' miRNA:   3'- -CGGa--UUGGUGG------UCGG-UUGUGu-----------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	126513	0.66	0.984253
	Target:  5'- gGCCUGcccgGCCgggGCCGcGCCccCGCGAgGGCc -3' miRNA:   3'- -CGGAU----UGG---UGGU-CGGuuGUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	60817	0.66	0.984253
	Target:  5'- gGCCgagaacccgAACUGCCGGCgGGCGCGcucgcagaGGCg -3' miRNA:   3'- -CGGa--------UUGGUGGUCGgUUGUGUug------CCG- -5'
21702	3'	-52.4	NC_004812.1	+	127226	0.66	0.980188
	Target:  5'- cGCCagacuCCGcCCGGCCccGCGCGccuccGCGGCc -3' miRNA:   3'- -CGGauu--GGU-GGUCGGu-UGUGU-----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	8499	0.66	0.986032
	Target:  5'- gGCCggcGGCCGCCcgAGCCGGCugccuuuUAucccggucgccGCGGCg -3' miRNA:   3'- -CGGa--UUGGUGG--UCGGUUGu------GU-----------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	76489	0.66	0.986032
	Target:  5'- cGCCggaucccgGACgGCCGGgCu-CAgGGCGGCg -3' miRNA:   3'- -CGGa-------UUGgUGGUCgGuuGUgUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	60409	0.66	0.984984
	Target:  5'- cGCCcgcGCgACCGcGuCCAcguugcggguucggaGCGCGACGGCg -3' miRNA:   3'- -CGGau-UGgUGGU-C-GGU---------------UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	21402	0.66	0.986032
	Target:  5'- cGUCUcGCCGCgC-GCCGACGCGucGCaGCg -3' miRNA:   3'- -CGGAuUGGUG-GuCGGUUGUGU--UGcCG- -5'
21702	3'	-52.4	NC_004812.1	+	152577	0.66	0.980188
	Target:  5'- gGCCgccGCCGCC-GCCGAgUGCcucACGGCc -3' miRNA:   3'- -CGGau-UGGUGGuCGGUU-GUGu--UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	75473	0.66	0.984253
	Target:  5'- gGUCUGcuccGCgGCCgcGGCCAGgucCAGCGGCa -3' miRNA:   3'- -CGGAU----UGgUGG--UCGGUUgu-GUUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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