miRNA display CGI


Results 81 - 100 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 52464 0.76 0.600929
Target:  5'- cGCCUccuGCCGCCuaCCGGCACG-CGGCa -3'
miRNA:   3'- -CGGAu--UGGUGGucGGUUGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 14351 0.76 0.600929
Target:  5'- aGCCgcacguGCuUGCCGGCCGcgcggGCGCGGCGGCg -3'
miRNA:   3'- -CGGau----UG-GUGGUCGGU-----UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 5469 0.76 0.600929
Target:  5'- gGCC-AGCaggGCCAGCUggcgcgggGACACGGCGGCg -3'
miRNA:   3'- -CGGaUUGg--UGGUCGG--------UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 20822 0.76 0.599886
Target:  5'- cGCCUcgUCACCAuccgcguGaCCGACGCGugGGCg -3'
miRNA:   3'- -CGGAuuGGUGGU-------C-GGUUGUGUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 88936 0.76 0.59051
Target:  5'- cCCUGGCCGCCGGUgGcgaggaggGCGCGGcCGGCg -3'
miRNA:   3'- cGGAUUGGUGGUCGgU--------UGUGUU-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 49895 0.76 0.59051
Target:  5'- cCCUcGCCGCCAGCagcacGCGCAgcgACGGCu -3'
miRNA:   3'- cGGAuUGGUGGUCGgu---UGUGU---UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2699 0.76 0.59051
Target:  5'- cGCCgGGCCcgaagacgcgGCCggaGGCCAGCACGgcGCGGCg -3'
miRNA:   3'- -CGGaUUGG----------UGG---UCGGUUGUGU--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 152651 0.75 0.653226
Target:  5'- aCCUGGCCGCCGuGCCcGgGCuGGCGGCc -3'
miRNA:   3'- cGGAUUGGUGGU-CGGuUgUG-UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 49328 0.75 0.642767
Target:  5'- gGCCc-GCUguACCgAGCCGACGCGGCGGUc -3'
miRNA:   3'- -CGGauUGG--UGG-UCGGUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 101338 0.75 0.678238
Target:  5'- gGCgCUcGCCGCagaggcgggcguucgCGGCCAcccGCACGACGGCg -3'
miRNA:   3'- -CG-GAuUGGUG---------------GUCGGU---UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 16187 0.75 0.674082
Target:  5'- cGCUcGAUCGCCAG-CAGCGCG-CGGCg -3'
miRNA:   3'- -CGGaUUGGUGGUCgGUUGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 15102 0.75 0.663667
Target:  5'- aGCCcGAgCGCCuggugcGCCggUACGGCGGCg -3'
miRNA:   3'- -CGGaUUgGUGGu-----CGGuuGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 100609 0.75 0.632299
Target:  5'- cGCUggagAACgagggCGCCGGCCAggaucgcgcGCACGGCGGCg -3'
miRNA:   3'- -CGGa---UUG-----GUGGUCGGU---------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 23039 0.75 0.653226
Target:  5'- cGCCggcaggacGCCGCCgAGCuCGACGCcGCGGCc -3'
miRNA:   3'- -CGGau------UGGUGG-UCG-GUUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 64809 0.75 0.663667
Target:  5'- gGCCUGACgGCCgagGGCCuGACGgcCAugGGCg -3'
miRNA:   3'- -CGGAUUGgUGG---UCGG-UUGU--GUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 47705 0.75 0.653226
Target:  5'- aCCcGACCcgggcgcCCGGCCGGCGCGagGCGGCg -3'
miRNA:   3'- cGGaUUGGu------GGUCGGUUGUGU--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 34211 0.75 0.653226
Target:  5'- cGCCcgcAGCUAcuCCGGCaAGCGCAACGGCg -3'
miRNA:   3'- -CGGa--UUGGU--GGUCGgUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 68395 0.75 0.642767
Target:  5'- cGCCcAGCCGCCGuCCGGgGCcGCGGCu -3'
miRNA:   3'- -CGGaUUGGUGGUcGGUUgUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 112761 0.75 0.65009
Target:  5'- cGCCgcgcccggacucggcGCCGCgAGCC-GCGCGGCGGCu -3'
miRNA:   3'- -CGGau-------------UGGUGgUCGGuUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 76343 0.75 0.642767
Target:  5'- cGCCgcACCGCCAccGCCAGguCcGCGGCc -3'
miRNA:   3'- -CGGauUGGUGGU--CGGUUguGuUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.