miRNA display CGI

Results 41 - 60 of 1131 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	139164	0.78	0.489167
	Target:  5'- cGCCacccCCACC-GCCAACGgGACGGCc -3' miRNA:   3'- -CGGauu-GGUGGuCGGUUGUgUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	73910	0.78	0.489167
	Target:  5'- aGCC--GCCGUCGGCCGGCGCccAGCGGCg -3' miRNA:   3'- -CGGauUGGUGGUCGGUUGUG--UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	14422	0.78	0.489167
	Target:  5'- gGCC-AGCCccgcGCCGGCCAGCGCGccaacgAUGGCg -3' miRNA:   3'- -CGGaUUGG----UGGUCGGUUGUGU------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	56893	0.78	0.498977
	Target:  5'- gGCCUGugCgGCCAGCCcugGGCGCAggcgccgccgcACGGCg -3' miRNA:   3'- -CGGAUugG-UGGUCGG---UUGUGU-----------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	129496	0.78	0.508873
	Target:  5'- cGCCgUAGCCcUCGGCCAGCGCcuccagcACGGCg -3' miRNA:   3'- -CGG-AUUGGuGGUCGGUUGUGu------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	4384	0.77	0.518851
	Target:  5'- cGCCaGGCC-CCAGCCGAaGCGGcCGGCg -3' miRNA:   3'- -CGGaUUGGuGGUCGGUUgUGUU-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	51435	0.77	0.518851
	Target:  5'- cGCCccGCCACCAGCCGcACGCGACccccGCc -3' miRNA:   3'- -CGGauUGGUGGUCGGU-UGUGUUGc---CG- -5'
21702	3'	-52.4	NC_004812.1	+	129892	0.77	0.518851
	Target:  5'- cGCCaGGCC-CCAGCCGAaGCGGcCGGCg -3' miRNA:   3'- -CGGaUUGGuGGUCGGUUgUGUU-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	41974	0.77	0.518851
	Target:  5'- cGCUgAACgGCCGGCU-GCACAACGGCc -3' miRNA:   3'- -CGGaUUGgUGGUCGGuUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	77447	0.77	0.527897
	Target:  5'- aCCUGuCCGCCGGCCGACACcaccccaAGCGcGCc -3' miRNA:   3'- cGGAUuGGUGGUCGGUUGUG-------UUGC-CG- -5'
21702	3'	-52.4	NC_004812.1	+	16487	0.77	0.528906
	Target:  5'- cGCCcccguguccGCCACCGGCCGggggGCGCGGgGGCg -3' miRNA:   3'- -CGGau-------UGGUGGUCGGU----UGUGUUgCCG- -5'
21702	3'	-52.4	NC_004812.1	+	41121	0.77	0.528906
	Target:  5'- gGCCgGGCCGCCGcCCGGCGCGgccgcacgcgcGCGGCg -3' miRNA:   3'- -CGGaUUGGUGGUcGGUUGUGU-----------UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	107163	0.77	0.547179
	Target:  5'- cGCCUGGCgggCACCGGacgacauguccaCGACGCGGCGGCc -3' miRNA:   3'- -CGGAUUG---GUGGUCg-----------GUUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	122917	0.77	0.5482
	Target:  5'- aGCCguUGGCCugCAcGCCcacgaugagauagGACACGGCGGCg -3' miRNA:   3'- -CGG--AUUGGugGU-CGG-------------UUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	153818	0.77	0.5482
	Target:  5'- aGCCguUGGCCugCAcGCCcacgaugagauagGACACGGCGGCg -3' miRNA:   3'- -CGG--AUUGGugGU-CGG-------------UUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	48317	0.77	0.549222
	Target:  5'- gGCCgacGCCGC-GGCCGAggcCGCAACGGCg -3' miRNA:   3'- -CGGau-UGGUGgUCGGUU---GUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	49202	0.77	0.549222
	Target:  5'- gGCCUGGCCGCacccGCCGuuuCGGCGGCg -3' miRNA:   3'- -CGGAUUGGUGgu--CGGUuguGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	362	0.77	0.558444
	Target:  5'- cCCUcacucucGGCCGCC-GCCGGCGCAucccGCGGCg -3' miRNA:   3'- cGGA-------UUGGUGGuCGGUUGUGU----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	31263	0.77	0.558444
	Target:  5'- cCCUcacucucGGCCGCC-GCCGGCGCAucccGCGGCg -3' miRNA:   3'- cGGA-------UUGGUGGuCGGUUGUGU----UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	82697	0.77	0.559472
	Target:  5'- cGCCgcUGGgCGCCGGCCGACG--GCGGCu -3' miRNA:   3'- -CGG--AUUgGUGGUCGGUUGUguUGCCG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home