miRNA display CGI


Results 61 - 80 of 1131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 49808 0.77 0.559472
Target:  5'- uGCCUGcCgGgCAGCCAGCGCGugGGg -3'
miRNA:   3'- -CGGAUuGgUgGUCGGUUGUGUugCCg -5'
21702 3' -52.4 NC_004812.1 + 57219 0.77 0.559472
Target:  5'- cCCcAGCCGCCGcagcGCCGACACGgcgcuGCGGCu -3'
miRNA:   3'- cGGaUUGGUGGU----CGGUUGUGU-----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 16891 0.76 0.568742
Target:  5'- gGCCgagGCCAUCAGCCAccaggcgcugcuGCGCAuggccugcgagguGCGGCa -3'
miRNA:   3'- -CGGau-UGGUGGUCGGU------------UGUGU-------------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 109688 0.76 0.569774
Target:  5'- gGCCUggggaaGACCACCAccGCCGccGCGCuGGCGGCc -3'
miRNA:   3'- -CGGA------UUGGUGGU--CGGU--UGUG-UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 51505 0.76 0.580123
Target:  5'- cGCuUUGGCCGCgCAGggucccgcccCCGGCGCAGCGGCg -3'
miRNA:   3'- -CG-GAUUGGUG-GUC----------GGUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 48050 0.76 0.580123
Target:  5'- gGCgCgcGCCACCAGCgAGCGCAGCGa- -3'
miRNA:   3'- -CG-GauUGGUGGUCGgUUGUGUUGCcg -5'
21702 3' -52.4 NC_004812.1 + 3988 0.76 0.580123
Target:  5'- cGCCgAGCCcUCGGCCAGCGCcuccagcACGGCg -3'
miRNA:   3'- -CGGaUUGGuGGUCGGUUGUGu------UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 108124 0.76 0.580123
Target:  5'- cGCCggucgAGCCcCCGGCCG-CGCGGcCGGCg -3'
miRNA:   3'- -CGGa----UUGGuGGUCGGUuGUGUU-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 70467 0.76 0.580123
Target:  5'- aCCgaGACCuCCAGCCA--GCAACGGCg -3'
miRNA:   3'- cGGa-UUGGuGGUCGGUugUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 26706 0.76 0.59051
Target:  5'- cGCCaUGGCCGCCGGCCGcuucgGCugGGgccUGGCg -3'
miRNA:   3'- -CGG-AUUGGUGGUCGGU-----UGugUU---GCCG- -5'
21702 3' -52.4 NC_004812.1 + 152214 0.76 0.59051
Target:  5'- cGCCaUGGCCGCCGGCCGcuucgGCugGGgccUGGCg -3'
miRNA:   3'- -CGG-AUUGGUGGUCGGU-----UGugUU---GCCG- -5'
21702 3' -52.4 NC_004812.1 + 97855 0.76 0.59051
Target:  5'- cGCCgggcGCCGCCGGCCGGguccuuCAAUGGCu -3'
miRNA:   3'- -CGGau--UGGUGGUCGGUUgu----GUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 88936 0.76 0.59051
Target:  5'- cCCUGGCCGCCGGUgGcgaggaggGCGCGGcCGGCg -3'
miRNA:   3'- cGGAUUGGUGGUCGgU--------UGUGUU-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 128207 0.76 0.59051
Target:  5'- cGCCgGGCCcgaagacgcgGCCggaGGCCAGCACGgcGCGGCg -3'
miRNA:   3'- -CGGaUUGG----------UGG---UCGGUUGUGU--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 2699 0.76 0.59051
Target:  5'- cGCCgGGCCcgaagacgcgGCCggaGGCCAGCACGgcGCGGCg -3'
miRNA:   3'- -CGGaUUGG----------UGG---UCGGUUGUGU--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 49895 0.76 0.59051
Target:  5'- cCCUcGCCGCCAGCagcacGCGCAgcgACGGCu -3'
miRNA:   3'- cGGAuUGGUGGUCGgu---UGUGU---UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 52430 0.76 0.5978
Target:  5'- gGCC--GCCGCCAGCCcggccaggaccagcAGCcCGACGGCc -3'
miRNA:   3'- -CGGauUGGUGGUCGG--------------UUGuGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 20822 0.76 0.599886
Target:  5'- cGCCUcgUCACCAuccgcguGaCCGACGCGugGGCg -3'
miRNA:   3'- -CGGAuuGGUGGU-------C-GGUUGUGUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 19044 0.76 0.600929
Target:  5'- aGCCUcucGGCCGCggCGGCCGAgACcGCGGCc -3'
miRNA:   3'- -CGGA---UUGGUG--GUCGGUUgUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 130977 0.76 0.600929
Target:  5'- gGCC-AGCaggGCCAGCUggcgcgggGACACGGCGGCg -3'
miRNA:   3'- -CGGaUUGg--UGGUCGG--------UUGUGUUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.