miRNA display CGI


Results 81 - 100 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 103252 0.76 0.600929
Target:  5'- ---cGGCgGCCGGgCGACGCGGCGGCg -3'
miRNA:   3'- cggaUUGgUGGUCgGUUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 5469 0.76 0.600929
Target:  5'- gGCC-AGCaggGCCAGCUggcgcgggGACACGGCGGCg -3'
miRNA:   3'- -CGGaUUGg--UGGUCGG--------UUGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 120463 0.76 0.600929
Target:  5'- cCCUGcGCCGCCacGGCCAACcCGugGGCc -3'
miRNA:   3'- cGGAU-UGGUGG--UCGGUUGuGUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 14351 0.76 0.600929
Target:  5'- aGCCgcacguGCuUGCCGGCCGcgcggGCGCGGCGGCg -3'
miRNA:   3'- -CGGau----UG-GUGGUCGGU-----UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 52464 0.76 0.600929
Target:  5'- cGCCUccuGCCGCCuaCCGGCACG-CGGCa -3'
miRNA:   3'- -CGGAu--UGGUGGucGGUUGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 72514 0.76 0.611372
Target:  5'- cGCC--GCCGCCgggguccgGGCCGGCGCccGCGGCg -3'
miRNA:   3'- -CGGauUGGUGG--------UCGGUUGUGu-UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 90134 0.76 0.611372
Target:  5'- cGCC-GGCCAaCAGCCGcguccuggACGCGGCGGCc -3'
miRNA:   3'- -CGGaUUGGUgGUCGGU--------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 135580 0.75 0.618693
Target:  5'- gGUCUcgcgcAGCCACCccaugcacccccgcGGCCGagGCGCGGCGGCg -3'
miRNA:   3'- -CGGA-----UUGGUGG--------------UCGGU--UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 95574 0.75 0.620785
Target:  5'- gGgCUAACCGCaCGGCCGcgcccgcGCGCGggcGCGGCa -3'
miRNA:   3'- -CgGAUUGGUG-GUCGGU-------UGUGU---UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 117155 0.75 0.620785
Target:  5'- cCCUGGCCACCgaGGCCAucgcccuGCugAcCGGCg -3'
miRNA:   3'- cGGAUUGGUGG--UCGGU-------UGugUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 79484 0.75 0.620785
Target:  5'- cGCCUGGCCgaggacgcgcuccACCAgGCCAAgGCcAUGGCg -3'
miRNA:   3'- -CGGAUUGG-------------UGGU-CGGUUgUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 113280 0.75 0.621832
Target:  5'- cGCCguggcgAugCACCAGCCcuu-CGGCGGCa -3'
miRNA:   3'- -CGGa-----UugGUGGUCGGuuguGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 142238 0.75 0.621832
Target:  5'- aCCUGgugcGCCGCCGcGCCcGCGCGGcCGGCa -3'
miRNA:   3'- cGGAU----UGGUGGU-CGGuUGUGUU-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 45194 0.75 0.621832
Target:  5'- aGCCcGGCgGCgCGGCCGGCAgcgaGACGGCg -3'
miRNA:   3'- -CGGaUUGgUG-GUCGGUUGUg---UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 91512 0.75 0.626018
Target:  5'- cGCC-AGCCACuCcuccgcggggcgcgcGGCCAGgGCGGCGGCg -3'
miRNA:   3'- -CGGaUUGGUG-G---------------UCGGUUgUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 100927 0.75 0.632299
Target:  5'- cGCCcaccGCCACCgacAGCC-ACugGACGGCc -3'
miRNA:   3'- -CGGau--UGGUGG---UCGGuUGugUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 77154 0.75 0.632299
Target:  5'- cGUCUcGGCCGgCAGCCcgccCGCGGCGGCg -3'
miRNA:   3'- -CGGA-UUGGUgGUCGGuu--GUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 129658 0.75 0.632299
Target:  5'- ---cGGCCGCCAGgCGGCGCugcGCGGCg -3'
miRNA:   3'- cggaUUGGUGGUCgGUUGUGu--UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 97113 0.75 0.632299
Target:  5'- cGCCgggGGCCGC--GCCGcCGCGGCGGCg -3'
miRNA:   3'- -CGGa--UUGGUGguCGGUuGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 100609 0.75 0.632299
Target:  5'- cGCUggagAACgagggCGCCGGCCAggaucgcgcGCACGGCGGCg -3'
miRNA:   3'- -CGGa---UUG-----GUGGUCGGU---------UGUGUUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.