miRNA display CGI

Results 101 - 120 of 1131 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21702	3'	-52.4	NC_004812.1	+	53032	0.75	0.632299
	Target:  5'- aCCgcuACCugCGcGCCAGCACG-CGGCa -3' miRNA:   3'- cGGau-UGGugGU-CGGUUGUGUuGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	75781	0.75	0.632299
	Target:  5'- cGCCgaacgcgGGCCcCCAGUCGAUGCGGCGGg -3' miRNA:   3'- -CGGa------UUGGuGGUCGGUUGUGUUGCCg -5'
21702	3'	-52.4	NC_004812.1	+	100609	0.75	0.632299
	Target:  5'- cGCUggagAACgagggCGCCGGCCAggaucgcgcGCACGGCGGCg -3' miRNA:   3'- -CGGa---UUG-----GUGGUCGGU---------UGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	76343	0.75	0.642767
	Target:  5'- cGCCgcACCGCCAccGCCAGguCcGCGGCc -3' miRNA:   3'- -CGGauUGGUGGU--CGGUUguGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	55817	0.75	0.642767
	Target:  5'- gGUCUucgGGCCcgagGCCGGCCAccGCACGAuCGGCg -3' miRNA:   3'- -CGGA---UUGG----UGGUCGGU--UGUGUU-GCCG- -5'
21702	3'	-52.4	NC_004812.1	+	57910	0.75	0.642767
	Target:  5'- cGCC--GCCGCCc-CCGGCGCGGCGGUu -3' miRNA:   3'- -CGGauUGGUGGucGGUUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	49328	0.75	0.642767
	Target:  5'- gGCCc-GCUguACCgAGCCGACGCGGCGGUc -3' miRNA:   3'- -CGGauUGG--UGG-UCGGUUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	68395	0.75	0.642767
	Target:  5'- cGCCcAGCCGCCGuCCGGgGCcGCGGCu -3' miRNA:   3'- -CGGaUUGGUGGUcGGUUgUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	66018	0.75	0.642767
	Target:  5'- cGCCggguuccuCCACCAGCUGugGaCGACGGUg -3' miRNA:   3'- -CGGauu-----GGUGGUCGGUugU-GUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	112761	0.75	0.65009
	Target:  5'- cGCCgcgcccggacucggcGCCGCgAGCC-GCGCGGCGGCu -3' miRNA:   3'- -CGGau-------------UGGUGgUCGGuUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	34211	0.75	0.653226
	Target:  5'- cGCCcgcAGCUAcuCCGGCaAGCGCAACGGCg -3' miRNA:   3'- -CGGa--UUGGU--GGUCGgUUGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	47705	0.75	0.653226
	Target:  5'- aCCcGACCcgggcgcCCGGCCGGCGCGagGCGGCg -3' miRNA:   3'- cGGaUUGGu------GGUCGGUUGUGU--UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	90306	0.75	0.653226
	Target:  5'- cGCCUGggcGCCGCCAGCC-GCGa---GGCg -3' miRNA:   3'- -CGGAU---UGGUGGUCGGuUGUguugCCG- -5'
21702	3'	-52.4	NC_004812.1	+	23039	0.75	0.653226
	Target:  5'- cGCCggcaggacGCCGCCgAGCuCGACGCcGCGGCc -3' miRNA:   3'- -CGGau------UGGUGG-UCG-GUUGUGuUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	71120	0.75	0.653226
	Target:  5'- gGCC-GACU-CCAGCCccCGCGGCGGCa -3' miRNA:   3'- -CGGaUUGGuGGUCGGuuGUGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	27142	0.75	0.653226
	Target:  5'- aCCUGGCCGCCGuGCCcGgGCuGGCGGCc -3' miRNA:   3'- cGGAUUGGUGGU-CGGuUgUG-UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	152651	0.75	0.653226
	Target:  5'- aCCUGGCCGCCGuGCCcGgGCuGGCGGCc -3' miRNA:   3'- cGGAUUGGUGGU-CGGuUgUG-UUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	48578	0.75	0.653226
	Target:  5'- cGCCgucaccuCCACCGGCggCGACGCGgccGCGGCc -3' miRNA:   3'- -CGGauu----GGUGGUCG--GUUGUGU---UGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	18667	0.75	0.662624
	Target:  5'- cGCCgcGCCgggaaagGCCGGUCAGCuacuuugaaACAGCGGCa -3' miRNA:   3'- -CGGauUGG-------UGGUCGGUUG---------UGUUGCCG- -5'
21702	3'	-52.4	NC_004812.1	+	15102	0.75	0.663667
	Target:  5'- aGCCcGAgCGCCuggugcGCCggUACGGCGGCg -3' miRNA:   3'- -CGGaUUgGUGGu-----CGGuuGUGUUGCCG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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