miRNA display CGI


Results 121 - 140 of 1131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21702 3' -52.4 NC_004812.1 + 64809 0.75 0.663667
Target:  5'- gGCCUGACgGCCgagGGCCuGACGgcCAugGGCg -3'
miRNA:   3'- -CGGAUUGgUGG---UCGG-UUGU--GUugCCG- -5'
21702 3' -52.4 NC_004812.1 + 124234 0.75 0.66992
Target:  5'- aCCUGGCgGCgGGCCuggcggggggcgcGCGCGGCGGCg -3'
miRNA:   3'- cGGAUUGgUGgUCGGu------------UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 43551 0.75 0.674082
Target:  5'- cGCU--GCCGCCgcGGCCGACGCcggccGCGGCc -3'
miRNA:   3'- -CGGauUGGUGG--UCGGUUGUGu----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 26178 0.75 0.674082
Target:  5'- cGCCgccuCCGCgGGCCGcaGCgaGCGGCGGCg -3'
miRNA:   3'- -CGGauu-GGUGgUCGGU--UG--UGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 58179 0.75 0.674082
Target:  5'- cGCCU-GCCGCCccgcGGCCGccgcaccgagACGCuGCGGCg -3'
miRNA:   3'- -CGGAuUGGUGG----UCGGU----------UGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 16187 0.75 0.674082
Target:  5'- cGCUcGAUCGCCAG-CAGCGCG-CGGCg -3'
miRNA:   3'- -CGGaUUGGUGGUCgGUUGUGUuGCCG- -5'
21702 3' -52.4 NC_004812.1 + 101338 0.75 0.678238
Target:  5'- gGCgCUcGCCGCagaggcgggcguucgCGGCCAcccGCACGACGGCg -3'
miRNA:   3'- -CG-GAuUGGUG---------------GUCGGU---UGUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 153050 0.74 0.681351
Target:  5'- cGCCUGcccGCCggcgcgcaagaagaGCCGGcCCGGCGCcGCGGCc -3'
miRNA:   3'- -CGGAU---UGG--------------UGGUC-GGUUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 27542 0.74 0.681351
Target:  5'- cGCCUGcccGCCggcgcgcaagaagaGCCGGcCCGGCGCcGCGGCc -3'
miRNA:   3'- -CGGAU---UGG--------------UGGUC-GGUUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 122340 0.74 0.684461
Target:  5'- --gUGGCCGCCagguagacGGCCAugAUGACGGCg -3'
miRNA:   3'- cggAUUGGUGG--------UCGGUugUGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 96525 0.74 0.684461
Target:  5'- cGCCUAccuggcgcggGCCGCCGGCCuggucGGCGCcAUGGUc -3'
miRNA:   3'- -CGGAU----------UGGUGGUCGG-----UUGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 51691 0.74 0.684461
Target:  5'- gGCCUcgguACCGCguGCCAggaagagcgccuGCGCcACGGCg -3'
miRNA:   3'- -CGGAu---UGGUGguCGGU------------UGUGuUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 75973 0.74 0.684461
Target:  5'- gGCCagcGCCugCAGgCGGCGCAgcucgACGGCg -3'
miRNA:   3'- -CGGau-UGGugGUCgGUUGUGU-----UGCCG- -5'
21702 3' -52.4 NC_004812.1 + 142638 0.74 0.684461
Target:  5'- uCCUGGCCGCCggGGCCGucgGgGCgAACGGCu -3'
miRNA:   3'- cGGAUUGGUGG--UCGGU---UgUG-UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 17870 0.74 0.684461
Target:  5'- aCCgcgggGGCgACCGGCCGGCACGccGCGGg -3'
miRNA:   3'- cGGa----UUGgUGGUCGGUUGUGU--UGCCg -5'
21702 3' -52.4 NC_004812.1 + 74820 0.74 0.693763
Target:  5'- gGCCgacGCCGCCGGCCcccucccGACGaugaGAUGGCg -3'
miRNA:   3'- -CGGau-UGGUGGUCGG-------UUGUg---UUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 113040 0.74 0.693763
Target:  5'- cGCCggacgGACgGCCgcGGCCGGCgucggccGCGGCGGCa -3'
miRNA:   3'- -CGGa----UUGgUGG--UCGGUUG-------UGUUGCCG- -5'
21702 3' -52.4 NC_004812.1 + 23545 0.74 0.694794
Target:  5'- cGCCaucGCCGCC-GCCGGCAUcguCGGCg -3'
miRNA:   3'- -CGGau-UGGUGGuCGGUUGUGuu-GCCG- -5'
21702 3' -52.4 NC_004812.1 + 5512 0.74 0.694794
Target:  5'- cGCCgggcGCCGCgCAGCaggGACACGGCGGg -3'
miRNA:   3'- -CGGau--UGGUG-GUCGg--UUGUGUUGCCg -5'
21702 3' -52.4 NC_004812.1 + 49379 0.74 0.694794
Target:  5'- gGCCUcGCCGCCcuguGCCucGACGCccaGGCGGCc -3'
miRNA:   3'- -CGGAuUGGUGGu---CGG--UUGUG---UUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.